View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15038_high_9 (Length: 432)
Name: NF15038_high_9
Description: NF15038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15038_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 7 - 415
Target Start/End: Original strand, 4442167 - 4442575
Alignment:
| Q |
7 |
tccaagaatattcttatcatcaaataattcagtgggaagaacttggttagaattttattctttgttcacataatacaacacagattgttgaaagtaatag |
106 |
Q |
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| T |
4442167 |
tccaaaaatattcttatcatcaaataattcagtgggaagaacttggttagaattttattcttcgttcacataatacaacacagattgttgaaagtaatag |
4442266 |
T |
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| Q |
107 |
agacagcccagccattttgccaagattatcatgttgcattggaactagagagctacggttgatgttaattttagcagtatttattgagtttatgagtaat |
206 |
Q |
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| T |
4442267 |
agacaacccagccattttgccaagattatcatgttgcattggaactagagagctacggttgatgttaattttagcagtatttattgagtttatgagtaat |
4442366 |
T |
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| Q |
207 |
taactggaccactgttcataacgtggtctgtcatgtatttctattttaatataaactctattatgaggaatgaaacctaaaaagaaaaataggcctctgt |
306 |
Q |
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| T |
4442367 |
taactggaccactgttcataacgtggtctgtcatgtatttctattttaatataaactctattatgagaaatgaaacctaaaaagaaaaataggcctctgt |
4442466 |
T |
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| Q |
307 |
ggcctctaatgaaaaagagttctttgccagacatgctaaatgtgagatagagtcaattataagaagaattttctcaatctatctataccataataatgaa |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
4442467 |
ggcctctaatgaaaaagagttctttgccagacatgctaaatgtgagatagagtcaattataagaagaattttctccatctatctataccataataatgaa |
4442566 |
T |
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| Q |
407 |
acttcaatt |
415 |
Q |
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| T |
4442567 |
acttcaatt |
4442575 |
T |
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