View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15038_low_1 (Length: 818)
Name: NF15038_low_1
Description: NF15038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15038_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 323 - 801
Target Start/End: Original strand, 6684331 - 6684813
Alignment:
| Q |
323 |
caatgaaaagataaaacctatcagcttagaccttcttcgttatatatnnnnnnn-gataaaatctatataannnnnnnnnnnnnnnncattggaggtaat |
421 |
Q |
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| T |
6684331 |
caatggaaagataaaacctatcagcttagaccttcttcgttatatataaaaaaaagataaaatctatataattttttctttgtttttcattggaggtaat |
6684430 |
T |
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| Q |
422 |
taactttacttgagatgtatctgctgcactaatggtaaacatctcttctaactgaaattcaaattttaatttatcacat--tatagaagtctaatatttt |
519 |
Q |
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| T |
6684431 |
taactttacttgagatgtatctgc---actaatggtaaacatctcttctaactgaaattcaaattttaatttatcacatattatagaagtctaatatttt |
6684527 |
T |
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| Q |
520 |
gtgctaaacccaatgttagcttcatttaaatatttcttatctacttaatgtggaactcgcaagggttgtcttatctctcacaagtaataataaataa--- |
616 |
Q |
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| T |
6684528 |
ctgctaaacccaacgttagcttcatttaaatatttattatctacttaatgtggaactcacaagggttgtctaatctctcacaagtaataataaataagta |
6684627 |
T |
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| Q |
617 |
-ataaaatgaaaactcctaatatgtgatgttagagataaggatagtaggatacttctgcgatggggattggctgatttagtttatgttgtagaaactgca |
715 |
Q |
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| T |
6684628 |
tataaaatgaaaactcctaatatgtgatgttagagataaggatagtaggatacttctgcgatggggattggctgatttagtttatgttgtggaaactgca |
6684727 |
T |
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| Q |
716 |
aagacaaacgtaaagaaatgtccttttctttttccctttttattgtttatttggtttatatattctatcaaaaagaccacgagtat |
801 |
Q |
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| T |
6684728 |
aagacaaacgtaaagaaatgtcctttcctttttccctttttattgtttatttggtttatatattctatcaaaaagaccacgagtat |
6684813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 19 - 273
Target Start/End: Original strand, 6684027 - 6684281
Alignment:
| Q |
19 |
gagctggtgttaagtgtactattactataaggtacaagatccaaaagaatgcctatatgtccaagatacaaggtttttcgagaaaaggtcccatccttca |
118 |
Q |
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| T |
6684027 |
gagctggtgttaagtgtactattactataaggtacaagatccaaaagaatgcctatatgtccaagatacaaggtttttcgagaaaaggtcccatccttca |
6684126 |
T |
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| Q |
119 |
atatcatgattgggaaaaaatatggtcttagctaaaggagttcaaaccaaacttggtaaaataatgaacaatttgaatagtttcacgattaatattagag |
218 |
Q |
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| T |
6684127 |
atatcatgattgggaaaaaatatggtcttagctaaaggagttcaaaccaaacttggtaaaataatgaacaatttgaatagtttcacgattaatattagag |
6684226 |
T |
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| Q |
219 |
atcgtgaagtgagaaagtttgttgaagaaacacctcaattcgagcaattaattta |
273 |
Q |
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| T |
6684227 |
atcgtgaagcgagaaagtttgttgaagaaacacctcaattcgagcaattaattta |
6684281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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