View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15038_low_11 (Length: 432)
Name: NF15038_low_11
Description: NF15038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15038_low_11 |
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| [»] scaffold0334 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 19 - 243
Target Start/End: Original strand, 11177266 - 11177497
Alignment:
| Q |
19 |
caagaaacataactgcaattgaaatcgaaca-------ccaaacagtagcgcaaacaacgaaaatatatggattatatggcacacgtactcagcaataac |
111 |
Q |
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| T |
11177266 |
caagaaacataactgcaattgaaatcgaacaccaaacaccaaacagtagcgcaaacaatgaaaatatatggattatatggcacacgtactcagcaataac |
11177365 |
T |
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| Q |
112 |
aattgttatatgctcagccccgcaacaacaattcaatttaattaaataaaagaaagaaaagggacgtagcagcagctttgaaaataaagggaatttggat |
211 |
Q |
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| T |
11177366 |
aattgttatatactcagcccagcaacaacaattcaatttaattaaataaaagaaagaaaagggacgtagcagcagctttgaaaataaagggaatttggat |
11177465 |
T |
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| Q |
212 |
tggtaagtgctgcaaaataaaatcgggttgag |
243 |
Q |
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| T |
11177466 |
tggtaagtgctgcaaaataaaatcgggttgag |
11177497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 313 - 413
Target Start/End: Original strand, 11177567 - 11177667
Alignment:
| Q |
313 |
tggattgctgaacgaaaatagaacacaggttctgaaagttaatgttatgcgataatcacaagctttgaatgaaaaaggaaactgaaaaccttgattacaa |
412 |
Q |
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| T |
11177567 |
tggattgctgaacgaaaatagaacacaggttctgaaagttaatgttatgcgataatcacaagctttgaatgaaaaaggaaactgaaaaccttgattacaa |
11177666 |
T |
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| Q |
413 |
t |
413 |
Q |
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| T |
11177667 |
t |
11177667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0334 (Bit Score: 154; Significance: 2e-81; HSPs: 2)
Name: scaffold0334
Description:
Target: scaffold0334; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 10 - 243
Target Start/End: Complemental strand, 16727 - 16469
Alignment:
| Q |
10 |
ataatactccaagaaacataactgcaattgaaatcgaacaccaaaca-------gtagcgcaaacaacgaaaatatatggattatatggcacacgtactc |
102 |
Q |
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| T |
16727 |
ataatactccaagaaacataactgcaattggaatcgaacaccaaacaccaaacagtagcgcaaacaatgaaaatatatggattatatggcacacgtactc |
16628 |
T |
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| Q |
103 |
agcaataacaattgttatatgctcagccccgcaacaa------------------caattcaatttaattaaataaaagaaagaaaagggacgtagcagc |
184 |
Q |
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| T |
16627 |
aacaataacaattgttatatgctcagtcccgcaacaatggaacagccaacaacaacaattcaatttaattaaataaaagaaagaaaagggacgtagcagc |
16528 |
T |
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| Q |
185 |
agctttgaaaataaagggaatttggattggtaagtgctgcaaaataaaatcgggttgag |
243 |
Q |
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| T |
16527 |
aactttgaaaataaagggaatttggattggtaagtgctgcaaaataaaatcgggttgag |
16469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0334; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 313 - 413
Target Start/End: Complemental strand, 16399 - 16299
Alignment:
| Q |
313 |
tggattgctgaacgaaaatagaacacaggttctgaaagttaatgttatgcgataatcacaagctttgaatgaaaaaggaaactgaaaaccttgattacaa |
412 |
Q |
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| T |
16399 |
tggattgctgaacgaaaatagaacacaggttctgaaagttaatgttatgcgataatcacaagctttgaataaaaaaggaaactgaaaaccttgattacaa |
16300 |
T |
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| Q |
413 |
t |
413 |
Q |
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| T |
16299 |
t |
16299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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