View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15038_low_15 (Length: 400)
Name: NF15038_low_15
Description: NF15038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15038_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 16 - 387
Target Start/End: Complemental strand, 28733459 - 28733088
Alignment:
| Q |
16 |
cacttctaatctgcaatgtgctttggatatactcattctgatatcttacctcggcaccatccagtgcagattttaactgccctgcttcagctttaacgga |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |
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| T |
28733459 |
cacttctaatctgcaatgtgctttggatatactcattctgatatcttacctcggcaccatccagtgcagattttagctgccctgcttcagctttaactga |
28733360 |
T |
|
| Q |
116 |
aacaagctcggctttgagccggtttatctcctcgctttctacaacttccaatgcaggtaagcgaggagataaaccgactccactgaccaaatcatcctga |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28733359 |
aacaagctcggctttgagccggtttatctcctcgctttctacaacttccaatgcaggtaagcgaggagataaaccgactccactgaccaaatcatcctga |
28733260 |
T |
|
| Q |
216 |
agtttgctcacaagttcctccagtgagcttacttgagaccttgatttctctaactctaaagctaaggattggtaatcttctgacgcttttgcaccttcta |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28733259 |
agtttgctcacaagttcctccagtgagcttacttgagaccttgatttctctaactctaaagctaaggattggtaatcttctgacgcttttgcaccttcta |
28733160 |
T |
|
| Q |
316 |
atcggagcgtttccactgtcttatttgcagcttccaattgcatttgagttgtaccaagtgtttccaatgcct |
387 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
28733159 |
atcggagcgtttccactgtcttatttgcagcttccaattgcatttgagttgtaccaactgtttccaatgcct |
28733088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 215 - 361
Target Start/End: Complemental strand, 22110127 - 22109981
Alignment:
| Q |
215 |
aagtttgctcacaagttcctccagtgagcttacttgagaccttgatttctctaactctaaagctaaggattggtaatcttctgacgcttttgcaccttct |
314 |
Q |
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|||||| |||||||||||||||| || || ||||||| ||||||| ||| ||||| ||||||||||| | |||| |||| | |||||| ||| ||| |
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| T |
22110127 |
aagtttcctcacaagttcctccaaggactttgcttgagatcttgattgctccaactccaaagctaaggacttgtaagcttcagttgcttttagaccatct |
22110028 |
T |
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| Q |
315 |
aatcggagcgtttccactgtcttatttgcagcttccaattgcatttg |
361 |
Q |
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||||||| |||||||||||||||||| | | ||||||||||||||| |
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| T |
22110027 |
gatcggagtgtttccactgtcttatttaccgtttccaattgcatttg |
22109981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 215 - 361
Target Start/End: Original strand, 40584462 - 40584608
Alignment:
| Q |
215 |
aagtttgctcacaagttcctccagtgagcttacttgagaccttgatttctctaactctaaagctaaggattggtaatcttctgacgcttttgcaccttct |
314 |
Q |
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|||||| |||||||||||||||| || || ||||||| ||||||| ||| ||||| ||||||||||| | |||| |||| | |||||| ||| ||| |
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| T |
40584462 |
aagtttcctcacaagttcctccaaggactttgcttgagatcttgattgctccaactccaaagctaaggacttgtaagcttcagttgcttttagaccatct |
40584561 |
T |
|
| Q |
315 |
aatcggagcgtttccactgtcttatttgcagcttccaattgcatttg |
361 |
Q |
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||||||| |||||||||||||||||| | | ||||||||||||||| |
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| T |
40584562 |
gatcggagtgtttccactgtcttatttaccgtttccaattgcatttg |
40584608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 148
Target Start/End: Complemental strand, 22110302 - 22110170
Alignment:
| Q |
16 |
cacttctaatctgcaatgtgctttggatatactcattctgatatcttacctcggcaccatccagtgcagattttaactgccctgcttcagctttaacgga |
115 |
Q |
| |
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|||||||||||||||||||||| ||||| || || | || ||||||| ||||||| |||||| ||||||||| |||||| || |||||| ||| | || |
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| T |
22110302 |
cacttctaatctgcaatgtgctctggatgtattcttcttggtatcttatctcggcaacatccaatgcagatttcaactgctctacttcagatttggcaga |
22110203 |
T |
|
| Q |
116 |
aacaagctcggctttgagccggtttatctcctc |
148 |
Q |
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| |||| |||||||||||| ||||||||||| |
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| T |
22110202 |
gataagcgcggctttgagcccatttatctcctc |
22110170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 148
Target Start/End: Original strand, 40584287 - 40584419
Alignment:
| Q |
16 |
cacttctaatctgcaatgtgctttggatatactcattctgatatcttacctcggcaccatccagtgcagattttaactgccctgcttcagctttaacgga |
115 |
Q |
| |
|
|||||||||||||||||||||| ||||| || || | || ||||||| ||||||| |||||| ||||||||| |||||| || |||||| ||| | || |
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| T |
40584287 |
cacttctaatctgcaatgtgctctggatgtattcttcttggtatcttatctcggcaacatccaatgcagatttcaactgctctacttcagatttggcaga |
40584386 |
T |
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| Q |
116 |
aacaagctcggctttgagccggtttatctcctc |
148 |
Q |
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| |||| |||||||||||| ||||||||||| |
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| T |
40584387 |
gataagcgcggctttgagcccatttatctcctc |
40584419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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