View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15038_low_17 (Length: 393)
Name: NF15038_low_17
Description: NF15038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15038_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 374
Target Start/End: Original strand, 2299298 - 2299670
Alignment:
| Q |
1 |
agtgtcagcttctgtttgaaaatgatgcatcaactaaagtgaagataattaaagatggggattcaccataacattctgtttgtattaatgaaaatagtgt |
100 |
Q |
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| T |
2299298 |
agtgtcaacttctgtttgaaaatgatgcatcaattaaagtgaagataattaaagatggggattcaccatatcattctgtttgtattaatgaaaatagtgt |
2299397 |
T |
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| Q |
101 |
ctttataattataaacatttacaacatgtggtagttcgtnnnnnnntatgctcgcatgttaggggtggagtattatcactattttattgataataactaa |
200 |
Q |
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| T |
2299398 |
ctttataattataaacatttacaacatgtggtagttcgtaaaaaaatatgctagcat-ttaggggtggagtattatcactattttattaataataactaa |
2299496 |
T |
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| Q |
201 |
ttcacttaaatatgtgattagtctctgcgttttcattcaattttggtattggtctctgcacctttttgttcgacattgataataactagcttaagcacaa |
300 |
Q |
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| T |
2299497 |
ttcacttaaatatgtgattaatctgtgcgctttcattcaattttggcattcctctctgcacctttttgtttggcattgataataactagtttgagcacaa |
2299596 |
T |
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| Q |
301 |
tttcgtgtaagaaagctacctaaatgacattgccatatggaatgcaatgaataatcgcaatatataggaacaaa |
374 |
Q |
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| T |
2299597 |
tttcgtgtaagaaagctacctaaatgacattgccatatggaatgcaatgaataattgcaatatataggaacaaa |
2299670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 267
Target Start/End: Complemental strand, 30419350 - 30419289
Alignment:
| Q |
206 |
ttaaatatgtgattagtctctgcgttttcattcaattttggtattggtctctgcaccttttt |
267 |
Q |
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| T |
30419350 |
ttaaatatgtgattagtctatgcattttcattcaattttggcattaatctctgcactttttt |
30419289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 267
Target Start/End: Original strand, 18046046 - 18046108
Alignment:
| Q |
205 |
cttaaatatgtgattagtctctgcgttttcattcaattttggtattggtctctgcaccttttt |
267 |
Q |
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| T |
18046046 |
cttaaatatgtgattagtccctgcactttcatcaaattttggcattggtccctgcactttttt |
18046108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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