View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15038_low_18 (Length: 382)
Name: NF15038_low_18
Description: NF15038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15038_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 45001974 - 45001607
Alignment:
| Q |
1 |
agtgagtgtgtatctcttaatcttagtagaaatagaagaaacaagtagcaattgaagaagaagcag---agagagattccagttccacatattgcaacaa |
97 |
Q |
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|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
45001974 |
agtgagtgtgtatctcttaatcttagcagaaacagaagaaacaagtagcaattgaagaagaagaagtagagagagattccagttccacatattgcaacag |
45001875 |
T |
|
| Q |
98 |
caaacgatgatgaaatggttggtagaagaagaagcaaccgtttaatgaatacaaaacaaacaagtctgctgcctcactgtcagatgaatatggcgacggt |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
45001874 |
caaacgatgatgaaatggttggtagaagaagaagcaaccgtttaatgaatacaaaacaaacaagtatgctgcctcactgtcagatgaatatggcgacggt |
45001775 |
T |
|
| Q |
198 |
ggccctgaaagcaccatttcatcaggaagaacgacccgtgcgggtgctttgaaacggtgagtggcgaagcaacaggtggccagc-cgagcgcaatgagaa |
296 |
Q |
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||||| |||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
45001774 |
ggcccagaaagcaccatttcatcaggaagaacaacatgcgcgggtgctttgaaacggtgagtggcgaagcaacaggtggccatcgcgagcgcaatgagaa |
45001675 |
T |
|
| Q |
297 |
ggacgacaacggaggagggaggagaatccattgcggcaaagttacagcatgcgaatgcgggggaatgt |
364 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
45001674 |
ggacgacaatggaggagggaggagaatccattgcggcaaagttacagcatacgaatgcgggggaatgt |
45001607 |
T |
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