View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15038_low_2 (Length: 700)
Name: NF15038_low_2
Description: NF15038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15038_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 473; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 199 - 687
Target Start/End: Original strand, 42330025 - 42330513
Alignment:
| Q |
199 |
tatttagttgtctacattgaaatcaagaagaaatctctaaacaaaagttttcaaaactgaaaggtactcaaacctatcttaactaaggaagaaattcacg |
298 |
Q |
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| T |
42330025 |
tatttagttgtctacattgaaatcaagaagaaatctctaaacaaaagttttcaaaactgaaaggtactcaaacctaacttaactaaggaagaaattcacg |
42330124 |
T |
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| Q |
299 |
aaaaatttcgcaaattacatcatcatctgccaattttaggaaggcaagaaaatcatcccagatttcatgtattttaccaaattccactaaatattgagcg |
398 |
Q |
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| T |
42330125 |
aaaaatttcgcaaattacatcgtcatctgccaattttaggaaggcaagaaaatcatcccagatttcatgtattttaccaaattccactaaatattgagcg |
42330224 |
T |
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| Q |
399 |
caactaatcttcaagtagggcaattgatagaaatatgctgcatggagcctctcaagtatattttttctgttgatatctttttgaagattcttttcacact |
498 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
42330225 |
caactaatcttcaagtagggcaattgatagaaatatgctgcatggagcctctcaagtatattttttctgttgatatcttcttgaagattcttttcacact |
42330324 |
T |
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| Q |
499 |
cctctctcaagtcaataacgccatagttctcagcagcaaccaatagctcgaaactatgatccgcaagttcttcatcgtcgatgttgtcatatagataatc |
598 |
Q |
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| T |
42330325 |
cctctctcaagtcaataacgccatatttctcagcagcaaccaatagctcgaaactatgatccgcaagttcttcatcgtcgatgttgtcatatagataatc |
42330424 |
T |
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| Q |
599 |
tataaatgcttgacaaacttcaggagacatatctgagatatttataacaagcatgttattctccttagaatcttctgcaaacatgtatt |
687 |
Q |
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| T |
42330425 |
tataaatgcttgacaaacttcaggagacatatctgagatatttataacaagcatgttattctccttagaatcttctgcaaacatgtatt |
42330513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 13 - 169
Target Start/End: Original strand, 42329855 - 42330009
Alignment:
| Q |
13 |
aatatggttttctaaaattataaccagccttatgctacaagacgccctctaagtacatatattacgacataaattttgtattttctaataaaaagccata |
112 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||| | |
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| T |
42329855 |
aatatggttttctaaaattataatcagccttatgctacaagactccctctaagtac--atattacgacataaattttgtattttctaat-aaaagccaaa |
42329951 |
T |
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| Q |
113 |
tgcatcatattgtattgtaaaaagaaaatgtatacacata-ggataaatgttgaactc |
169 |
Q |
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| T |
42329952 |
tgcatcatattgtattgtaaaaagaaaatgtatacacgtagggataaatgttgaactc |
42330009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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