View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15038_low_20 (Length: 379)
Name: NF15038_low_20
Description: NF15038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15038_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 12 - 369
Target Start/End: Complemental strand, 36797996 - 36797639
Alignment:
| Q |
12 |
tattcttagtaaccaatggttcatttcattcatgccatgacttaaccttatttaacaactacgtacatgacaaacnnnnnnnnngcaatattttaaagtt |
111 |
Q |
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| T |
36797996 |
tattcttagtaaccaatggttcatttcattcatgccatgacttaaccttatttaacaactacgtacatgacaaactttttttttgcaatattttaaagtt |
36797897 |
T |
|
| Q |
112 |
gaactttggtgaattttatgataatttttatgcggagaatagggagggaaatggtgtaacgttatagtcattcaaaaggagaagttgatgatgttataaa |
211 |
Q |
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| T |
36797896 |
gaactttggtgaattttatgataatttttatgcggagaatagggagggaaatggtgtaacgttatagtcattcaaaaggagaagttgatgatgttataaa |
36797797 |
T |
|
| Q |
212 |
gtcataaactttgtattgtcggtgtggctatataccaaagaaataaaaaagaagagctcactatgaatttaatgtcatcaatgaaatgacgaaagaaaaa |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36797796 |
gtcataaactttgtattgtcggtgtggctatataccaaagaaataaaaaagaagagctcactatgaatttaatgtcatcaatgaaatgacgaaagaaaaa |
36797697 |
T |
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| Q |
312 |
ctaaagtatgaagattttccatattgtatggtagagttaggcttcatgatcttgatga |
369 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
36797696 |
ctaaagtatgaagattttccatattgtatggtagagttaggcttcatgatcttcatga |
36797639 |
T |
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