View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15038_low_21 (Length: 378)
Name: NF15038_low_21
Description: NF15038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15038_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 3448744 - 3449102
Alignment:
| Q |
1 |
gcgcttgaattctcttcgaaaacgtgaaaacttcatcgtcatccatattactaagcactcttaattctttcatcaaacaccttacgtgcattacagtttt |
100 |
Q |
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| T |
3448744 |
gcgcttgaattctcttcgaaaacgtgaaaacttcatcgtcatccatattactaagcactctcaattctttcatcaaacaccttacatgcattacagtttt |
3448843 |
T |
|
| Q |
101 |
cgcaatgttacctgaatttttcacctctccttgaatccttatcatcgctgcaccttctctgattctacagagcgcttcaccgagattacttgcggagctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3448844 |
cgcaatgttacctgaatttttcacctctccttgaatccttatcatcgctgcaccttctctgattctacagagcgcttcaccgagattacttgcggagctt |
3448943 |
T |
|
| Q |
201 |
ataaaaggtgttcggaaattgtgtttgttgatgtgattctgatcatcggcgatggtgagagattcgttttcgtcgatgtaatcaacgccggtggcttcga |
300 |
Q |
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| T |
3448944 |
ataaaaggtgttcggaaattgtgtttgttgatgtgattctgatcatcggcgatggtgagagattcgttttcgtcgatgtaatcaacgccggtggcttcga |
3449043 |
T |
|
| Q |
301 |
ggatttgagcttcgacgaaatggccgattctgacgggggagatgactgggattgaaacg |
359 |
Q |
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| T |
3449044 |
ggatttgagcttcgacgaaatggccgattctgacgggggagatgactgggattgaaacg |
3449102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 263 - 359
Target Start/End: Complemental strand, 35039103 - 35039007
Alignment:
| Q |
263 |
ttcgttttcgtcgatgtaatcaacgccggtggcttcgaggatttgagcttcgacgaaatggccgattctgacgggggagatgactgggattgaaacg |
359 |
Q |
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| T |
35039103 |
ttcgttttcgtcgatgtaatcaacgccggtggcttcgaggatttaagcttcgacgaaatgaccgattctgacaggggagatgacaggaattgaaacg |
35039007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 263 - 359
Target Start/End: Original strand, 46205097 - 46205193
Alignment:
| Q |
263 |
ttcgttttcgtcgatgtaatcaacgccggtggcttcgaggatttgagcttcgacgaaatggccgattctgacgggggagatgactgggattgaaacg |
359 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | | |||||||||||||||||||||| || ||||||||| |
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| T |
46205097 |
ttcgttttcgtcgatgtaatcaacgccggtggcttcgaggatttaagcttcgacgacacgatcgattctgacgggggagatgacgggaattgaaacg |
46205193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 263 - 358
Target Start/End: Complemental strand, 41587881 - 41587786
Alignment:
| Q |
263 |
ttcgttttcgtcgatgtaatcaacgccggtggcttcgaggatttgagcttcgacgaaatggccgattctgacgggggagatgactgggattgaaac |
358 |
Q |
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||||||||||||||||||||||||| |||||||||| | ||||| ||||||||||| ||| ||||| ||||| ||| ||||| | || |||||||| |
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| T |
41587881 |
ttcgttttcgtcgatgtaatcaacgtcggtggcttcaaagatttaagcttcgacgacatgaccgatcctgacagggaagatggcgggaattgaaac |
41587786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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