View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15038_low_25 (Length: 335)
Name: NF15038_low_25
Description: NF15038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15038_low_25 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 38375017 - 38374699
Alignment:
| Q |
1 |
catattcccaaatgtcctttgattatgaaatcttgtattgctgagtacttcgagctcaaagagctcaatcataacatggttcgtgaatcgatgactcaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
38375017 |
catattcccaaatgtcctttgattatgaaatcttgtattgctgagtacttcgagctcaa---------tcataacatggttcgtgaatcgatgactcaaa |
38374927 |
T |
|
| Q |
101 |
tgactataaaacatcgtcttccatttcactttgttgagtggcataaatttagggcattcaccaaatttgtttctgataatgaggctcaatttctatccag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38374926 |
tgactataaaacatcgtcttccatttcactttgttgagtgggataaatttagggcattcaccaaatttgtttctgataatgaggctcaatttctatccag |
38374827 |
T |
|
| Q |
201 |
atatggtcttgctgatgatgtgatgaaagtttacttgcttcagaaagataaactgaaaaaacagctagctggaatagaaggtagaatgtgtttgagtttt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38374826 |
atatggtcttgctgatgatgtgatgaaagtttacttgcttcaaaaagataaactgaaaaaacagctagctggaatagaaggtagaatgtgtttgagtttt |
38374727 |
T |
|
| Q |
301 |
cgttgttggacttcttccacttcttctc |
328 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
38374726 |
cgttgttggacttcttccacttcttctc |
38374699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 38380190 - 38379864
Alignment:
| Q |
1 |
catattcccaaatgtcctttgattatgaaatcttgtattgctgagtacttcgagctcaaagagctcaatcataacatggttcgtgaatcgatgactcaaa |
100 |
Q |
| |
|
||||||||| |||||||||| ||||||||||| ||||||| ||| | ||| |||||||| || | |||||| |||||||||||||| || ||||||| |
|
|
| T |
38380190 |
catattcccgtatgtcctttggttatgaaatctcgtattgccgagcatttcaagctcaaaaagattgatcataggatggttcgtgaatcaattactcaaa |
38380091 |
T |
|
| Q |
101 |
tgactataaaacatcgtcttccatttcactttgttgagtggcataaatttagggcattcaccaaatttgtttctgataatgaggctcaatttctatccag |
200 |
Q |
| |
|
||||||||||| ||| ||||||||||| | |||||||||| | ||||||||| |||||| ||||||||||| ||||||||||||||||| || || |
|
|
| T |
38380090 |
tgactataaaaaatcatcttccatttcggtctgttgagtggggtgaatttagggaattcactaaatttgtttcgttcaatgaggctcaatttctttctag |
38379991 |
T |
|
| Q |
201 |
atatggtcttgctgatgatgtgatgaaagtttacttgcttcagaaagataaactgaaaaaacagctagctggaatagaaggtagaatgtgtttgagtttt |
300 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||||| | ||||| ||| ||||||||||||| |||| ||| || ||| || |||||||||| ||| |
|
|
| T |
38379990 |
atatggtgttgctaatgatgtgatgaaagtttacttgcttgaaaaagagaaattgaaaaaacagcttgctgcaattgagggtggagtgtgtttgagcttt |
38379891 |
T |
|
| Q |
301 |
cgttgttggacttcttccacttcttct |
327 |
Q |
| |
|
||||||||||||||||| |||||||| |
|
|
| T |
38379890 |
cgttgttggacttcttctgcttcttct |
38379864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 38370297 - 38369969
Alignment:
| Q |
1 |
catattcccaaatgtcctttgattatgaaatcttgtattgctgagtacttcgagctcaaagagctcaatcataacatggttcgtgaatcgatgactcaaa |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| ||||||| || | ||| ||||||| | | |||||| ||||||||||| ||| | ||||||| |
|
|
| T |
38370297 |
catattaccaaatgtcctttgattatgaaatctcgtattgccaagcatttcaagctcaacaaaattgatcataggatggttcgtgattcggttactcaaa |
38370198 |
T |
|
| Q |
101 |
tgactataaaacatcgtcttccatttcactttgttgagtggcataaatttagggcattcaccaaatttgtttctgataatgaggctcaatttctatccag |
200 |
Q |
| |
|
||||||||||| | |||||||||| |||| ||||||| || ||||||||||||| |||||||||| |||| ||||||||||| || ||| || || |
|
|
| T |
38370197 |
tgactataaaaagttacattccatttcagtttgctgagtgggatgaatttagggcatttaccaaatttgcttcttttaatgaggctcgatctctttctag |
38370098 |
T |
|
| Q |
201 |
atatggtcttgctgatgatgtgatgaaagtttacttgcttcagaaagataaactgaaaaaacagctagctggaatagaaggtagaatgtgtttgagtttt |
300 |
Q |
| |
|
| || | ||| | ||||||||||||||||||||||||| | || |||||| ||||||||||||| |||| | | | ||| || |||||||||| ||| |
|
|
| T |
38370097 |
agataatgttgtcgctgatgtgatgaaagtttacttgcttgaaaaggataaattgaaaaaacagctggctgcagttaagggtggagtgtgtttgagcttt |
38369998 |
T |
|
| Q |
301 |
cgttgttggacttcttccacttcttctca |
329 |
Q |
| |
|
| ||||||||||||||||||||||||||| |
|
|
| T |
38369997 |
cattgttggacttcttccacttcttctca |
38369969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University