View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15038_low_27 (Length: 325)
Name: NF15038_low_27
Description: NF15038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15038_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 33628476 - 33628170
Alignment:
| Q |
1 |
atttccttctccgtcttctcctttaacaaaccgataccaaaaccaatgtttaccccatatgatgtgcattgaatccaaagcaattcctttagtctccggc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33628476 |
atttccttctccgtcttctcctttaacaaaccgataccaaaaccaatgtttaccccatatgatgtgcattgaatccaaagcaattcctttagtctccggc |
33628377 |
T |
|
| Q |
101 |
nnnnnnnntataatgaaaagagtcatcacaacaacccaaccagcatagaacaaaaatgccccaaacttcaagtggcataacatagtcaagaatgtttgcg |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33628376 |
aaaaaaaatataatgaaaagagtcatcacaacaacccaaccagcatagaacaaaaatgccccaaacttcaagtggcataacatagtcaagaatgtttgcg |
33628277 |
T |
|
| Q |
201 |
ataacacaaatatcattatgaaatgcacagcaactgctatgctttgtccagtgcttcttatatttactggaaaaatctcagttggaattagccatgttag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33628276 |
ataacacaaatatcattatgaaatgcacagcaacagctatgctttgtccagtgcttcttatatttactggaaaaatctcagttggaattagccatgttag |
33628177 |
T |
|
| Q |
301 |
aggactc |
307 |
Q |
| |
|
||||||| |
|
|
| T |
33628176 |
aggactc |
33628170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 14 - 305
Target Start/End: Complemental strand, 33609978 - 33609687
Alignment:
| Q |
14 |
tcttctcctttaacaaaccgataccaaaaccaatgtttaccccatatgatgtgcattgaatccaaagcaattcctttagtctccggcnnnnnnnntataa |
113 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||||| |||||||| ||| |||||||||||||| ||||||||||||||| ||| ||||| |
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| T |
33609978 |
tcttctcctttaacaaatcgacaccaaaaccaatgtttttcccatatggtgtacattgaatccaaaggaattcctttagtctcaggcaagaaaaatataa |
33609879 |
T |
|
| Q |
114 |
tgaaaagagtcatcacaacaacccaaccagcatagaacaaaaatgccccaaacttcaagtggcataacatagtcaagaatgtttgcgataacacaaatat |
213 |
Q |
| |
|
| ||||||||||||||| |||||||||||||||||||||| || || |||||||| ||||| |||||||| |||||||||||||| |||| |||||||| |
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| T |
33609878 |
taaaaagagtcatcacagcaacccaaccagcatagaacaagaaggctccaaacttaaagtgacataacattgtcaagaatgtttgtgatagcacaaatac |
33609779 |
T |
|
| Q |
214 |
cattatgaaatgcacagcaactgctatgctttgtccagtgcttcttatatttactggaaaaatctcagttggaattagccatgttagaggac |
305 |
Q |
| |
|
|||||||| || | ||||| |||||||||||||| ||| |||||||||||||||| ||||||||| ||||||| |||||||||||||||| |
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| T |
33609778 |
tattatgaattgtatagcaatagctatgctttgtcctgtggttcttatatttactgggaaaatctcacttggaataagccatgttagaggac |
33609687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 14 - 299
Target Start/End: Complemental strand, 33619260 - 33618975
Alignment:
| Q |
14 |
tcttctcctttaacaaaccgataccaaaaccaatgtttaccccatatgatgtgcattgaatccaaagcaattcctttagtctccggcnnnnnnnntataa |
113 |
Q |
| |
|
|||| |||||||||| ||||| |||||||||| ||| | |||||||| ||| |||||| ||||||| ||||||||| ||||| ||| |||| |
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|
| T |
33619260 |
tcttgtcctttaacataccgagaccaaaaccagtgtctgccccatatagtgtacattgactccaaaggaattcctttggtctcaggcaagaagaagataa |
33619161 |
T |
|
| Q |
114 |
tgaaaagagtcatcacaacaacccaaccagcatagaacaaaaatgccccaaacttcaagtggcataacatagtcaagaatgtttgcgataacacaaatat |
213 |
Q |
| |
|
|| ||||||||||||| ||||||| ||||||||| | || ||||||||||||| |||||||||||| |||||||||||||||||||||||||| || |
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|
| T |
33619160 |
caaacagagtcatcacaataacccaaaaagcatagaagacgaaggccccaaacttcatgtggcataacattgtcaagaatgtttgcgataacacaaagat |
33619061 |
T |
|
| Q |
214 |
cattatgaaatgcacagcaactgctatgctttgtccagtgcttcttatatttactggaaaaatctcagttggaattagccatgtta |
299 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||| ||| ||||||| |||||||| ||||||||| ||||||| |||||||||| |
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|
| T |
33619060 |
tattatgaattgcacagcaacagctatgctttgtcctgtggttcttatttttactgggaaaatctcacttggaataagccatgtta |
33618975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 133 - 303
Target Start/End: Complemental strand, 33623957 - 33623787
Alignment:
| Q |
133 |
aacccaaccagcatagaacaaaaatgccccaaacttcaagtggcataacatagtcaagaatgtttgcgataacacaaatatcattatgaaatgcacagca |
232 |
Q |
| |
|
||||||||| ||||||||||||| |||||||| | || ||||||||||||||||||||||||||||||| |||||| | |||||||||||||||| || |
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|
| T |
33623957 |
aacccaacccgcatagaacaaaatggccccaaagtataactggcataacatagtcaagaatgtttgcgatagcacaaagaccattatgaaatgcacaaca |
33623858 |
T |
|
| Q |
233 |
actgctatgctttgtccagtgcttcttatatttactggaaaaatctcagttggaattagccatgttagagg |
303 |
Q |
| |
|
|| ||||||||||||| | |||||| ||||| | || |||||||||||||||||||||||||||||||| |
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|
| T |
33623857 |
acagctatgctttgtcgaatgcttcctatataaatggggaaaatctcagttggaattagccatgttagagg |
33623787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 17 - 294
Target Start/End: Complemental strand, 33596548 - 33596271
Alignment:
| Q |
17 |
tctcctttaacaaaccgataccaaaaccaatgtttaccccatatgatgtgcattgaatccaaagcaattcctttagtctccggcnnnnnnnntataatga |
116 |
Q |
| |
|
||||||||||||||||| |||| |||||||||| |||||||| || | |||||| ||||||||||||||||| ||||| ||| || || | |
|
|
| T |
33596548 |
tctcctttaacaaaccgccgccaataccaatgtttgccccatataatatacattgactccaaagcaattcctttggtctcaggcaaaaagaaaatgataa |
33596449 |
T |
|
| Q |
117 |
aaagagtcatcacaacaacccaaccagcatagaacaaaaatgccccaaacttcaagtggcataacatagtcaagaatgtttgcgataacacaaatatcat |
216 |
Q |
| |
|
| ||||||||||| |||||||| ||||||||||| || || |||||||| |||||||||| ||| |||||||||||||| ||||||||||| | || |
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|
| T |
33596448 |
atagagtcatcactgcaacccaaaatgcatagaacaagaaagcaccaaacttgaagtggcatagcattgtcaagaatgtttgtgataacacaaacaagat |
33596349 |
T |
|
| Q |
217 |
tatgaaatgcacagcaactgctatgctttgtccagtgcttcttatatttactggaaaaatctcagttggaattagcca |
294 |
Q |
| |
|
|||||| || ||| |||||||||| ||||||||||| |||| || |||| || ||||| ||| ||||||||||||| |
|
|
| T |
33596348 |
tatgaattgtacaccaactgctatactttgtccagttgttctgatttttaaggggaaaatttcacttggaattagcca |
33596271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 15 - 294
Target Start/End: Complemental strand, 33603681 - 33603402
Alignment:
| Q |
15 |
cttctcctttaacaaaccgataccaaaaccaatgtttaccccatatgatgtgcattgaatccaaagcaattcctttagtctccggcnnnnnnnntataat |
114 |
Q |
| |
|
||||| ||||||||||||| |||| |||||||||| |||||||| || | |||||| ||||||||||||||||| ||||| ||| || || |
|
|
| T |
33603681 |
cttctactttaacaaaccgccgccaataccaatgtttgccccatataatatacattgactccaaagcaattcctttggtctcaggcaaaaagaaaatgat |
33603582 |
T |
|
| Q |
115 |
gaaaagagtcatcacaacaacccaaccagcatagaacaaaaatgccccaaacttcaagtggcataacatagtcaagaatgtttgcgataacacaaatatc |
214 |
Q |
| |
|
|| ||||||||||| |||||||| ||||||||||| || || |||||||| |||||||||| ||| |||||||||||||| ||||||||||| | |
|
|
| T |
33603581 |
aaatagagtcatcactgcaacccaaaatgcatagaacaagaaagcaccaaacttgaagtggcatagcattgtcaagaatgtttgtgataacacaaacaag |
33603482 |
T |
|
| Q |
215 |
attatgaaatgcacagcaactgctatgctttgtccagtgcttcttatatttactggaaaaatctcagttggaattagcca |
294 |
Q |
| |
|
|||||||| || ||| |||||||||| ||||||||||| |||| || |||| || ||||| ||| ||||||||||||| |
|
|
| T |
33603481 |
attatgaattgtacaccaactgctatactttgtccagttgttctgatttttaaggggaaaatttcacttggaattagcca |
33603402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 17 - 294
Target Start/End: Complemental strand, 33589376 - 33589099
Alignment:
| Q |
17 |
tctcctttaacaaaccgataccaaaaccaatgtttaccccatatgatgtgcattgaatccaaagcaattcctttagtctccggcnnnnnnnntataatga |
116 |
Q |
| |
|
||||||||||||||||| |||| |||||||||| |||||||| || | |||||| ||||||||||||||||| ||||| ||| || || | |
|
|
| T |
33589376 |
tctcctttaacaaaccgccgccaataccaatgtttgccccatataatatacattgactccaaagcaattcctttggtctcaggcaaaaagaaaatgataa |
33589277 |
T |
|
| Q |
117 |
aaagagtcatcacaacaacccaaccagcatagaacaaaaatgccccaaacttcaagtggcataacatagtcaagaatgtttgcgataacacaaatatcat |
216 |
Q |
| |
|
| ||||||||||| |||||||| ||||||||||| || || |||||||| |||||||||| ||| |||||||||||||| ||||||| ||| | || |
|
|
| T |
33589276 |
atagagtcatcactgcaacccaaaatgcatagaacaagaaagcaccaaacttgaagtggcatagcattgtcaagaatgtttgtgataacataaacaagat |
33589177 |
T |
|
| Q |
217 |
tatgaaatgcacagcaactgctatgctttgtccagtgcttcttatatttactggaaaaatctcagttggaattagcca |
294 |
Q |
| |
|
|||||| || ||| |||||||||| ||||||||||| |||| || |||| || ||||| ||| ||||||||||||| |
|
|
| T |
33589176 |
tatgaattgtacaccaactgctatactttgtccagttgttctgatttttaaggggaaaatttcacttggaattagcca |
33589099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 109 - 305
Target Start/End: Complemental strand, 33563703 - 33563507
Alignment:
| Q |
109 |
tataatgaaaagagtcatcacaacaacccaaccagcatagaacaaaaatgccccaaacttcaagtggcataacatagtcaagaatgtttgcgataacaca |
208 |
Q |
| |
|
|||||| || || ||||| ||||||| |||| || || |||||| || || ||| |||||||||| |||||||| ||||||||||| || || |||||| |
|
|
| T |
33563703 |
tataataaagagggtcatgacaacaatccaagcactatggaacaagaaagcaccatacttcaagtgacataacattgtcaagaatgtctgagacaacaca |
33563604 |
T |
|
| Q |
209 |
aatatcattatgaaatgcacagcaactgctatgctttgtccagtgcttcttatatttactggaaaaatctcagttggaattagccatgttagaggac |
305 |
Q |
| |
|
||||| ||||||| ||||||| || ||||||||||||||||| |||| || || | |||||||| ||| ||||||||| |||| |||||||| |
|
|
| T |
33563603 |
aatatagttatgaattgcacagaaatagctatgctttgtccagttgttctgattttcaaaggaaaaatttcacttggaattatccataatagaggac |
33563507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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