View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15038_low_28 (Length: 324)
Name: NF15038_low_28
Description: NF15038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15038_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 574407 - 574103
Alignment:
| Q |
1 |
catagaaacattgatcttactatagtctgtctacactatatctttataacttgtcttcaacctacctagtccctaccatctccctctttttcagatcctg |
100 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
574407 |
catagaaacattgatcttactatagtcagtctacactatatctttataacttgtcttcaacctacctagtccctaccatctccctctttttcagatcctg |
574308 |
T |
|
| Q |
101 |
aatttttgtttagctaacttggtttcttagtgtttttcccatccattgctcatnnnnnnnnnnnnntgtattatatttataccaaaaatgctaaacatcg |
200 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
574307 |
aatttttgtttagctaccttggtttcttagtgtttttcccatccattgctcat---aaaaaaaaattgtattatatttataccaaaaatgctaaacatcg |
574211 |
T |
|
| Q |
201 |
cgacacgctcatcacgagtatttcacgaattgtactgaactcatctttcatgacagcagaattgtaacaatttcatttatacttttgaagctacatccaa |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
574210 |
cgacacgctcatcacgagtatttcacgaattgtactgaactcatctttcatgacagcagaattgtaacaatttcatttatgcttttgaagctacatccaa |
574111 |
T |
|
| Q |
301 |
ctggatta |
308 |
Q |
| |
|
|||||||| |
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| T |
574110 |
ctggatta |
574103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 109; Significance: 8e-55; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 49245327 - 49245176
Alignment:
| Q |
1 |
catagaaacattgatcttactatagtctgtctacactatatctttataacttgtcttcaacctacctagtccctaccatctccctctttttcagatcctg |
100 |
Q |
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||||| ||||||||| ||| ||||||||| ||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||| |
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| T |
49245327 |
cataggaacattgattttattatagtctgcctacattatatctttataacttgtcttcaacgtacgtagtccctaccatctccctctttttcagat-ctg |
49245229 |
T |
|
| Q |
101 |
aatttttgtttagctaacttggtttcttagtgtttttcccatccattgctcat |
153 |
Q |
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|
|||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
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| T |
49245228 |
aatttttgtttaactaccttggtttcttagtgtttttcccatccattgctcat |
49245176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 183 - 308
Target Start/End: Complemental strand, 2471925 - 2471801
Alignment:
| Q |
183 |
caaaaatgctaaacatcgcgacacgctcatcacgagtatttcacgaattgtactgaactcatctttcatgacagcagaattgtaacaatttcatttatac |
282 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| | |
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| T |
2471925 |
caaaaatgctaaacatcacgacacgctcatcacgagtatttcacgaattgtactgaattcatctttcatga-agcagaattgtaacaatttcatttatgc |
2471827 |
T |
|
| Q |
283 |
ttttgaagctacatccaactggatta |
308 |
Q |
| |
|
|||||||||||||||||||||||||| |
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|
| T |
2471826 |
ttttgaagctacatccaactggatta |
2471801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 183 - 308
Target Start/End: Original strand, 8980981 - 8981105
Alignment:
| Q |
183 |
caaaaatgctaaacatcgcgacacgctcatcacgagtatttcacgaattgtactgaactcatctttcatgacagcagaattgtaacaatttcatttatac |
282 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| | |
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| T |
8980981 |
caaaaatgctaaacatcacgacacgctcatcacgagtatttcacgaattgtactgaattcatctttcatga-agcagaattgtaacaatttcatttatgc |
8981079 |
T |
|
| Q |
283 |
ttttgaagctacatccaactggatta |
308 |
Q |
| |
|
|||||||||||||||||||||||||| |
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|
| T |
8981080 |
ttttgaagctacatccaactggatta |
8981105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 183 - 308
Target Start/End: Complemental strand, 27135124 - 27135000
Alignment:
| Q |
183 |
caaaaatgctaaacatcgcgacacgctcatcacgagtatttcacgaattgtactgaactcatctttcatgacagcagaattgtaacaatttcatttatac |
282 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| | |
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| T |
27135124 |
caaaaatgctaaacatcacgacacgctcatcacgagtatttcacgaattgtactgaattcatctttcatga-agcagaattgtaacaatttcatttatgc |
27135026 |
T |
|
| Q |
283 |
ttttgaagctacatccaactggatta |
308 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
27135025 |
ttttgaagctacatccaactggatta |
27135000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 243 - 290
Target Start/End: Original strand, 23268249 - 23268296
Alignment:
| Q |
243 |
atctttcatgacagcagaattgtaacaatttcatttatacttttgaag |
290 |
Q |
| |
|
||||||||||||| || |||||||||||||||||| || ||||||||| |
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|
| T |
23268249 |
atctttcatgacaacataattgtaacaatttcattcatgcttttgaag |
23268296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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