View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15038_low_30 (Length: 322)
Name: NF15038_low_30
Description: NF15038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15038_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 124; Significance: 9e-64; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 15230525 - 15230370
Alignment:
| Q |
1 |
ttacccattctacgaagaaatgagttaatttatccccagacatacctggatatgcctgtcacaccaatgtggaagagattagaaatttccaaaacaaaat |
100 |
Q |
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| T |
15230525 |
ttacccattctacgaagaaatgagttaatttatccccagacatacctggatatgcctgtcacaccaatgtggaagagattagaaatttcaaaaagaaaat |
15230426 |
T |
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| Q |
101 |
attctagaactcgtgatcaat-aaattgacagatacattttcgaaattatatacat |
155 |
Q |
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| T |
15230425 |
attcgagaactcgcgatcaataaaactgacagataaattttcgaaattatatacat |
15230370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 168 - 302
Target Start/End: Complemental strand, 15229919 - 15229785
Alignment:
| Q |
168 |
caataaaaagaggtaatggctctgctagggtttctagcttcgttcgccgtcgatagtgtttccctctcattctaacctttccatttccttgtcaaggtat |
267 |
Q |
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| T |
15229919 |
caataaaaagagttaatggctctgctagggtttctagcttggttcgccatcgatagtgtttcactcccattacaacctttccatttccttgtcaaggtat |
15229820 |
T |
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| Q |
268 |
actggtttatggtgcaggtgagatgacaagggctc |
302 |
Q |
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| T |
15229819 |
actggtttatggtgcaggtgagatgacaagggctc |
15229785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 15248603 - 15248524
Alignment:
| Q |
1 |
ttacccattctacgaagaaatgagttaatttatccccagacatacctggatatgcctgtcacaccaatgtggaagagattag |
82 |
Q |
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||||||||||||||||||||||| || |||||| || |||| ||||||| || |||| ||||||||||||||||||||| |
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| T |
15248603 |
ttacccattctacgaagaaatgactttttttatctcctgacaaacctggaaatacctg--ccaccaatgtggaagagattag |
15248524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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