View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15038_low_31 (Length: 305)
Name: NF15038_low_31
Description: NF15038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15038_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 1845188 - 1844926
Alignment:
| Q |
1 |
catgcattgtgaatctcttaatcgtgttcttcaagttgtttgataggccataacaaagattaaaggttggaatgaagatgttcacctcaaagcttttcag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1845188 |
catgcattgtgaatctcttaatcgtgttcttcaagttgtttgatagaccataacaaagattaaaggttggaatgaagatgttcacctcaaagcttttcag |
1845089 |
T |
|
| Q |
101 |
gctgacctttcgtcggttgagtcaattataaagttcagtacttccctgcggcagtggcttttgaattccgatttgcactgcttggtacaaatactaataa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
1845088 |
gctgacctttcgtcggttgagtcaattataaagttcagtacttccgtgcggcaatggcttttgaattccgatctgcactgcttggtacaaatactaataa |
1844989 |
T |
|
| Q |
201 |
acaatgctggaatacttgcaacatctcctagaatcacagctgagggctacaattagtaatcac |
263 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
1844988 |
acaatgctggaatacttgcaacatctcctagaatcacaactgagggctacgattagtaatcac |
1844926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 1838045 - 1838304
Alignment:
| Q |
1 |
catgcattgtgaatctcttaatcgtgttcttcaagttgtttgataggccataacaaagattaaaggttggaatgaagatgttcacctcaaagcttttcag |
100 |
Q |
| |
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||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
1838045 |
catgcattgtgaagatcttaatcgtgttcttcccgttgtttgataggccataacaaagattaaaggttggaatgaggatgcccacctcaaagcttttcag |
1838144 |
T |
|
| Q |
101 |
gctgacctttcgtcggttgagtcaattataaagttcagtacttccctgcggcagtggcttttgaattccgatttgcactgcttggtacaaatactaataa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
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| T |
1838145 |
gctgacctttcgtcggttgagtcaattataaagttcagtacttccctgcggcagtggcttttggattccgatttgcactgctcggtacaaatactaataa |
1838244 |
T |
|
| Q |
201 |
acaatgctggaatacttgcaacatctcctagaatcacagctgagggctacaattagtaat |
260 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||| ||||||||||| || |||||| |
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| T |
1838245 |
acaatgctggaatacttgcaacatctcctagagtcacaactgagggctacgataagtaat |
1838304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 18 - 260
Target Start/End: Complemental strand, 41382462 - 41382220
Alignment:
| Q |
18 |
ttaatcgtgttcttcaagttgtttgataggccataacaaagattaaaggttggaatgaagatgttcacctcaaagcttttcaggctgacctttcgtcggt |
117 |
Q |
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||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||| |
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| T |
41382462 |
ttaattgtgttcttcccgttgtttgatagaccataacaaagattaaaggttggaatgaggatgcccacctcaaagctttttaggctgacctttcgtcggt |
41382363 |
T |
|
| Q |
118 |
tgagtcaattataaagttcagtacttccctgcggcagtggcttttgaattccgatttgcactgcttggtacaaatactaataaacaatgctggaatactt |
217 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||| |||||| ||||||||||||||||||||||||||| |
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| T |
41382362 |
tgagtcaattataaagttcagtacttccttgcggcagtggcttttggattctgatttgcactgctcggtacagatactaataaacaatgctggaatactt |
41382263 |
T |
|
| Q |
218 |
gcaacatctcctagaatcacagctgagggctacaattagtaat |
260 |
Q |
| |
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|| ||||||| |||| ||||||||||||||||| || |||||| |
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| T |
41382262 |
gccacatctcttagagtcacagctgagggctacgatcagtaat |
41382220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 3 - 263
Target Start/End: Original strand, 18632723 - 18632983
Alignment:
| Q |
3 |
tgcattgtgaatctcttaatcgtgttcttcaagttgtttgataggccataacaaagattaaaggttggaatgaagatgttcacctcaaagcttttcaggc |
102 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
18632723 |
tgcattgtaaatctcgtaatcgtgttcttcaagttgttcgataggccataacaaagattaaaggttggaatgaagatgttcacctcaaagcttttcagac |
18632822 |
T |
|
| Q |
103 |
tgacctttcgtcggttgagtcaattataaagttcagtacttccctgcggcagtggcttttgaattccgatttgcactgcttggtacaaatactaataaac |
202 |
Q |
| |
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|||||||| |||||| ||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||| |||||||||||||||| || |
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| T |
18632823 |
tgaccttttgtcggtggagtcaattataaagttcagtacttccctacggcagtggtttttggattccgatttgcactgctcggtacaaatactaatatac |
18632922 |
T |
|
| Q |
203 |
aatgctggaatacttgcaacatctcctagaatcacagctgagggctacaattagtaatcac |
263 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
18632923 |
aatgctggaatacttgcaacatctcctagaatcacagctgagggctaagattagtaatcac |
18632983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 18639355 - 18639096
Alignment:
| Q |
1 |
catgcattgtgaatctcttaatcgtgttcttcaagttgtttgataggccataacaaagattaaaggttggaatgaagatgttcacctcaaagcttttcag |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
18639355 |
catgcattgtgaagatcttaatcgtgttcttcccgttgtttgatagaccataaaaaagattaaaggttggaatgaggatgcccacctcaaagcttttcag |
18639256 |
T |
|
| Q |
101 |
gctgacctttcgtcggttgagtcaattataaagttcagtacttccctgcggcagtggcttttgaattccgatttgcactgcttggtacaaatactaataa |
200 |
Q |
| |
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||||| ||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||| |
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| T |
18639255 |
gctgatatttcgtcggctgagtcaattataaagttcggtacttccctgcggcaatggcttttggattccgatttgcactgctcggtacaaatactaataa |
18639156 |
T |
|
| Q |
201 |
acaatgctggaatacttgcaacatctcctagaatcacagctgagggctacaattagtaat |
260 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||| ||||||||||| || |||||| |
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|
| T |
18639155 |
acaatgctggaatacttgcaacatctcctagagtcacaactgagggctacgataagtaat |
18639096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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