View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15038_low_34 (Length: 287)
Name: NF15038_low_34
Description: NF15038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15038_low_34 |
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Alignment Details
Target: chr6 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 123 - 281
Target Start/End: Complemental strand, 8814658 - 8814500
Alignment:
| Q |
123 |
ttgtgcaggttcaaagttagatgctagtccaaggcttgattctaatactttcactttgtgttggtgttgtatcttcttagctttcagtggtgttctgttt |
222 |
Q |
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| T |
8814658 |
ttgtgcaggttcaaagttagatgctagtccaaggcttgattctaagactttcactttgtgttggtgttgtatcttcttagcttctagtggtgttctggtt |
8814559 |
T |
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| Q |
223 |
tgttgttctttatttcaattttctgtttaggatgtggtactgtgctgggtctgtgctgc |
281 |
Q |
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| T |
8814558 |
tgttgttctttaattcaattttctgtttaggatgtggtactgtgctgggtctttgctgc |
8814500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 7077751 - 7077825
Alignment:
| Q |
1 |
gaaatatcgggtttgtgtactgttctgtcattttgaacttgactatggttatgatgatttggtgtaaaacaaaac |
75 |
Q |
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| T |
7077751 |
gaaatatcgggtttgtgtactgttctgtcattttgaacttgactatggttatgatgatttggtgtaaaacaaaac |
7077825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 109 - 265
Target Start/End: Original strand, 21964446 - 21964598
Alignment:
| Q |
109 |
gaatccaaccttgattgtgcaggttcaaagttagatgctagtccaaggcttgattctaatactttcactttgtgttggtgttgtatcttcttagctttca |
208 |
Q |
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| T |
21964446 |
gaatccaagcttgattgtgcaggttcagagttagatgctagtccatggcttgattctaagactttcactttgtgttggtgttgtatctccttagcttcca |
21964545 |
T |
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| Q |
209 |
gtggtgttctgttttgttgttcttta-tttcaattttctgtttaggatgtggtactgt |
265 |
Q |
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| T |
21964546 |
atcg-----tgttttgttgttctttattttgagttttctgtttagcatgtggtactgt |
21964598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 246
Target Start/End: Original strand, 23379793 - 23379904
Alignment:
| Q |
139 |
ttagatgctagtccaaggcttgattctaatactttcactttgtgtt-ggtgttgtatcttcttagctttc----agtggtgttctgttttgttgttcttt |
233 |
Q |
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||||||||||||||| |||||||| |||| | | || ||||||||| |||||||| ||| |||||||| | | ||||||| |||||||||||||||| |
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| T |
23379793 |
ttagatgctagtccatggcttgatgctaagaatgtc-ctttgtgtttggtgttgtctctccttagcttccttccaatggtgttttgttttgttgttcttt |
23379891 |
T |
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| Q |
234 |
atttcaattttct |
246 |
Q |
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| T |
23379892 |
atttagattttct |
23379904 |
T |
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