View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15038_low_38 (Length: 270)

Name: NF15038_low_38
Description: NF15038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15038_low_38
NF15038_low_38
[»] chr5 (2 HSPs)
chr5 (50-249)||(5682314-5682513)
chr5 (153-238)||(4822528-4822613)
[»] chr1 (7 HSPs)
chr1 (114-245)||(17630247-17630379)
chr1 (153-243)||(34040747-34040836)
chr1 (135-209)||(4488769-4488839)
chr1 (142-243)||(30984510-30984611)
chr1 (114-245)||(7444904-7445035)
chr1 (153-214)||(16966544-16966605)
chr1 (199-243)||(26923177-26923221)
[»] chr4 (6 HSPs)
chr4 (115-245)||(4197191-4197322)
chr4 (115-232)||(33873862-33873979)
chr4 (121-245)||(13414259-13414383)
chr4 (163-212)||(36832840-36832888)
chr4 (158-245)||(6317012-6317098)
chr4 (169-237)||(26184607-26184675)
[»] chr7 (10 HSPs)
chr7 (114-244)||(28198004-28198134)
chr7 (132-251)||(7936022-7936141)
chr7 (148-231)||(6727610-6727692)
chr7 (163-241)||(35116897-35116975)
chr7 (153-249)||(18797788-18797884)
chr7 (113-232)||(36721170-36721289)
chr7 (135-225)||(40198840-40198930)
chr7 (163-240)||(30080125-30080201)
chr7 (153-245)||(10316038-10316130)
chr7 (114-238)||(46578956-46579080)
[»] chr2 (9 HSPs)
chr2 (115-245)||(39575465-39575595)
chr2 (135-245)||(3855960-3856070)
chr2 (170-232)||(3773047-3773109)
chr2 (153-219)||(6913416-6913481)
chr2 (87-244)||(37534387-37534545)
chr2 (192-240)||(27888162-27888210)
chr2 (200-240)||(41226736-41226776)
chr2 (191-244)||(29735728-29735781)
chr2 (191-239)||(41311763-41311811)
[»] chr3 (2 HSPs)
chr3 (114-245)||(31375490-31375621)
chr3 (114-226)||(48600599-48600709)
[»] chr8 (3 HSPs)
chr8 (113-231)||(45185424-45185541)
chr8 (100-245)||(31087047-31087192)
chr8 (142-245)||(7176511-7176615)
[»] chr6 (2 HSPs)
chr6 (198-240)||(9752634-9752676)
chr6 (199-240)||(24265139-24265180)


Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 50 - 249
Target Start/End: Complemental strand, 5682513 - 5682314
Alignment:
Q  50 aagggatattattacaatttatattagtataattaaagagaaacgctaaaaagtgtcattgaaacacttgtttagaaattcaaaaaagaaactttttatt 149  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  5682513 aagggatattattacaatttatattagtataattaaagagaaacgctaaaaagtgtccttgaaacacttgtttaaaaattcaaaaaagaaactttttatt 5682414  T
Q  150 gagaattgtatagtcaacacattgaaacttaaaaatagaactttttccacataaaatttataaataatttactcttttgaatctttaacaagtgccgtaa 249  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  5682413 gagaattgtatagtcaacacattgaaacttaaaaatagaactttttccacataaaatttataaataatttactcttttgaatctttaacaagtgtcgtaa 5682314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 153 - 238
Target Start/End: Complemental strand, 4822613 - 4822528
Alignment:
Q  153 aattgtatagtcaacacattgaaacttaaaaatagaactttttccacataaaatttataaataatttactcttttgaatctttaac 238  Q
    |||||| || ||| ||||||||||||||||||  |||||||||| ||||||||||||||||| |||| ||||||| ||||||||||    
T  4822613 aattgtgtattcaccacattgaaacttaaaaaatgaactttttctacataaaatttataaatcatttcctcttttaaatctttaac 4822528  T

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Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 114 - 245
Target Start/End: Original strand, 17630247 - 17630379
Alignment:
Q  114 cacttgtttagaaattcaaaaaagaaactttttattgagaattgtatagtcaacacattgaaactt-aaaaatagaactttttccacataaaatttataa 212  Q
    ||||||||||||| |||||| |||||||||||| ||| |||||||||| |||| |||||||||||| ||||| | ||||||||| |||||||||||||||    
T  17630247 cacttgtttagaagttcaaagaagaaactttttcttgggaattgtatattcaagacattgaaacttaaaaaaaaaaactttttctacataaaatttataa 17630346  T
Q  213 ataatttactcttttgaatctttaacaagtgcc 245  Q
    || |||| ||||||| |||| ||||||||||||    
T  17630347 attatttcctcttttaaatccttaacaagtgcc 17630379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 243
Target Start/End: Original strand, 34040747 - 34040836
Alignment:
Q  153 aattgtatagtcaacacattgaaacttaaaaatagaactttttccacataaaatttataaataatttactcttttgaatctttaacaagtg 243  Q
    |||||| || ||||||||| ||||| | |||| | ||| ||||| |||||||||||| ||||||||| ||||||| |||||||||||||||    
T  34040747 aattgtgtattcaacacatagaaacattaaaaaa-aacattttctacataaaatttacaaataatttcctcttttaaatctttaacaagtg 34040836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 135 - 209
Target Start/End: Complemental strand, 4488839 - 4488769
Alignment:
Q  135 aagaaactttttattgagaattgtatagtcaacacattgaaacttaaaaatagaactttttccacataaaattta 209  Q
    |||||||||||| |||| ||||||||| ||||||||    |||||||||| ||||||||||| ||||||||||||    
T  4488839 aagaaactttttcttgaaaattgtatattcaacaca----aacttaaaaaaagaactttttctacataaaattta 4488769  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 243
Target Start/End: Original strand, 30984510 - 30984611
Alignment:
Q  142 tttttattgagaattgtatagtcaacacattgaaactt-aaaaatagaactttttccacataaaatttataaataatttactcttttgaatctttaacaa 240  Q
    ||||| |||| |||||| || | |||| ||| |||||| ||||||| ||||||||| |||||||| |||||||| ||||  ||||||||| |||||||||    
T  30984510 ttttttttgaaaattgtgtatttaacaaattaaaacttcaaaaata-aactttttctacataaaacttataaatcatttcatcttttgaaactttaacaa 30984608  T
Q  241 gtg 243  Q
    |||    
T  30984609 gtg 30984611  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 245
Target Start/End: Original strand, 7444904 - 7445035
Alignment:
Q  114 cacttgtttagaaattcaaaaaagaaactttttattgagaattgtatagtcaacacattgaaacttaaaaatagaactttttccacataaaatttataaa 213  Q
    |||||| | ||||||||||| |||||||||| | |||||| |||| || ||||||||||||||  | ||||   ||||||||  |||| ||| |||| ||    
T  7444904 cacttgataagaaattcaaagaagaaactttatcttgagatttgtgtattcaacacattgaaatatcaaaaagcaactttttatacatgaaagttatcaa 7445003  T
Q  214 taatttactctttt-gaatctttaacaagtgcc 245  Q
    | |||| || |||| ||||||||||||||||||    
T  7445004 ttattt-ctattttagaatctttaacaagtgcc 7445035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 153 - 214
Target Start/End: Complemental strand, 16966605 - 16966544
Alignment:
Q  153 aattgtatagtcaacacattgaaacttaaaaatagaactttttccacataaaatttataaat 214  Q
    |||||| || ||| ||||||||||||| ||||  |||||||||| |||||||||||| ||||    
T  16966605 aattgtgtactcaccacattgaaacttcaaaaatgaactttttctacataaaatttacaaat 16966544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 243
Target Start/End: Complemental strand, 26923221 - 26923177
Alignment:
Q  199 cataaaatttataaataatttactcttttgaatctttaacaagtg 243  Q
    ||||||| |||||||| |||| |||||||||||| ||||||||||    
T  26923221 cataaaacttataaattatttcctcttttgaatcattaacaagtg 26923177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 5e-28; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 115 - 245
Target Start/End: Complemental strand, 4197322 - 4197191
Alignment:
Q  115 acttgtttagaaattcaaaaaagaaacttttta-ttgagaattgtatagtcaacacattgaaacttaaaaatagaactttttccacataaaatttataaa 213  Q
    |||||||||||| || ||| ||||||||||||  |||  |||||| || ||||||| |||||||||||||| | ||||||||| ||||||||||||||||    
T  4197322 acttgtttagaagttaaaagaagaaacttttttcttggaaattgtgtattcaacaccttgaaacttaaaaaaataactttttctacataaaatttataaa 4197223  T
Q  214 taatttactcttttgaatctttaacaagtgcc 245  Q
    | |||| |||||||||||| ||||||||||||    
T  4197222 tcatttcctcttttgaatccttaacaagtgcc 4197191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 115 - 232
Target Start/End: Complemental strand, 33873979 - 33873862
Alignment:
Q  115 acttgtttagaaattcaaaaaagaaactttttattgagaattgtatagtcaacacattgaaacttaaaaatagaactttttccacataaaatttataaat 214  Q
    |||||||||||| |  ||| |||||||||||| |||  |||||| |  | ||| |||||||||||||||| |||||| |||| |||||||||||||| ||    
T  33873979 acttgtttagaagtcaaaagaagaaacttttttttggaaattgtgtttttaacgcattgaaacttaaaaaaagaactatttctacataaaatttatagat 33873880  T
Q  215 aatttactcttttgaatc 232  Q
     |||| ||||||||||||    
T  33873879 catttcctcttttgaatc 33873862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 121 - 245
Target Start/End: Complemental strand, 13414383 - 13414259
Alignment:
Q  121 ttagaaattcaaaaaagaaactttttattgagaattgtatagtcaacacattgaaactt-aaaaatagaactttttccacataaaatttataaataattt 219  Q
    |||||| | |||| |||||||||||| |||  |||||| || | |||   ||||||||| ||||||| ||||||||  ||||||||||||||||| |||     
T  13414383 ttagaagtccaaataagaaactttttcttggaaattgtgtatttaacctgttgaaacttcaaaaata-aactttttttacataaaatttataaattattc 13414285  T
Q  220 actcttttgaatctttaacaagtgcc 245  Q
     |||||||||||| ||||||||||||    
T  13414284 cctcttttgaatcattaacaagtgcc 13414259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 163 - 212
Target Start/End: Complemental strand, 36832888 - 36832840
Alignment:
Q  163 tcaacacattgaaacttaaaaatagaactttttccacataaaatttataa 212  Q
    |||| |||||||||||||||||| |||||||||| |||||||||||||||    
T  36832888 tcaatacattgaaacttaaaaat-gaactttttctacataaaatttataa 36832840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 158 - 245
Target Start/End: Original strand, 6317012 - 6317098
Alignment:
Q  158 tatagtcaacacattgaaacttaaaaatagaactttttccacataaaatttataaataatttactcttttgaatctttaacaagtgcc 245  Q
    |||| |||||| |||||||| | |||| | ||||||||| | ||||||||||| ||| |||| || ||||||||||||||| ||||||    
T  6317012 tatattcaacatattgaaacattaaaaaataactttttcaatataaaatttatcaattatttcct-ttttgaatctttaactagtgcc 6317098  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 237
Target Start/End: Complemental strand, 26184675 - 26184607
Alignment:
Q  169 cattgaaacttaaaaatagaactttttccacataaaatttataaataatttactcttttgaatctttaa 237  Q
    ||||||||||| ||||   ||||||||  || ||||||||||||||||||| |||||| ||||| ||||    
T  26184675 cattgaaacttcaaaaagaaactttttatacttaaaatttataaataatttcctctttagaatcattaa 26184607  T

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Target: chr7 (Bit Score: 59; Significance: 5e-25; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 114 - 244
Target Start/End: Complemental strand, 28198134 - 28198004
Alignment:
Q  114 cacttgtttagaaattcaaaaaagaaactttttattgagaattgtatagtcaacacattgaaacttaaaaatagaactttttccacataaaatttataaa 213  Q
    ||||||||||||| | |||| |||||||||||| |||  |||||| || |||| |||||||||||| ||||   ||||||||| ||||||| ||||||||    
T  28198134 cacttgtttagaagtccaaagaagaaactttttcttggaaattgtgtattcaagacattgaaacttcaaaaagaaactttttctacataaattttataaa 28198035  T
Q  214 taatttactcttttgaatctttaacaagtgc 244  Q
    | |||| |||||||||||| |||||||||||    
T  28198034 ttatttcctcttttgaatccttaacaagtgc 28198004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 132 - 251
Target Start/End: Original strand, 7936022 - 7936141
Alignment:
Q  132 aaaaagaaactttttattgagaattgtatagtcaacacattgaaacttaaaaatagaactttttccacataaaatttataaataatttactcttttgaat 231  Q
    |||| |||||||||| ||| ||||||| || ||||||||||||||||| ||||  ||||| ||||  ||||| |||||||||  |||| |||||||||||    
T  7936022 aaaaggaaacttttttttgggaattgtgtattcaacacattgaaacttcaaaaatgaactatttctgcataagatttataaaccatttcctcttttgaat 7936121  T
Q  232 ctttaacaagtgccgtaaac 251  Q
    | |||||||||||| |||||    
T  7936122 ccttaacaagtgccctaaac 7936141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 148 - 231
Target Start/End: Complemental strand, 6727692 - 6727610
Alignment:
Q  148 ttgagaattgtatagtcaacacattgaaacttaaaaatagaactttttccacataaaatttataaataatttactcttttgaat 231  Q
    |||| |||||| || |||||| |||||||||||| || |||| |||||| ||||||||||| |||||||||| |||||||||||    
T  6727692 ttgaaaattgtgtattcaacagattgaaacttaataaaagaattttttctacataaaattt-taaataattttctcttttgaat 6727610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 163 - 241
Target Start/End: Original strand, 35116897 - 35116975
Alignment:
Q  163 tcaacacattgaaacttaaaaatagaactttttccacataaaatttataaataatttactcttttgaatctttaacaag 241  Q
    |||| |||||||||||| ||||  ||| |||||| ||||||||||||||||| |||| || ||||||||| ||||||||    
T  35116897 tcaatacattgaaacttcaaaaaggaaatttttctacataaaatttataaattatttccttttttgaatccttaacaag 35116975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 153 - 249
Target Start/End: Complemental strand, 18797884 - 18797788
Alignment:
Q  153 aattgtatagtcaacacattgaaacttaaaaatagaactttttccacataaaatttataaataatttactcttttgaatctttaacaagtgccgtaa 249  Q
    |||||| || |||||  ||||||||||||||| ||||| |||   ||||||||||||||||| |||| || ||||||||| ||||| |||| |||||    
T  18797884 aattgtgtattcaacgtattgaaacttaaaaaaagaacatttattacataaaatttataaatcattttcttttttgaatccttaactagtgtcgtaa 18797788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 232
Target Start/End: Complemental strand, 36721289 - 36721170
Alignment:
Q  113 acacttgtttagaaattcaaaaaagaaactttttattgagaattgtatagtcaacacattgaaacttaaaaatagaactttttccacataaaatttataa 212  Q
    |||||||||||||| |  ||| |||||||| ||| ||   || ||| || |||||||||| ||| ||||||| ||||||||||  |||||||| ||||||    
T  36721289 acacttgtttagaagtcaaaagaagaaactctttcttagaaaatgtgtattcaacacatttaaatttaaaaaaagaactttttatacataaaacttataa 36721190  T
Q  213 ataatttactcttttgaatc 232  Q
     | |||| ||||||||||||    
T  36721189 gtcatttcctcttttgaatc 36721170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 225
Target Start/End: Original strand, 40198840 - 40198930
Alignment:
Q  135 aagaaactttttattgagaattgtatagtcaacacattgaaacttaaaaatagaactttttccacataaaatttataaataatttactctt 225  Q
    |||||||||||| |||| |||||| || ||||||| ||||||||| ||||   ||| ||||  |||||| ||||| ||||||||| |||||    
T  40198840 aagaaacttttttttgaaaattgtgtattcaacacgttgaaactttaaaaagtaacattttttacataagatttacaaataattttctctt 40198930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 163 - 240
Target Start/End: Complemental strand, 30080201 - 30080125
Alignment:
Q  163 tcaacacattgaaacttaaaaatagaactttttccacataaaatttataaataatttactcttttgaatctttaacaa 240  Q
    |||||||||| |||||| ||||| |||||||||| ||||||||||| ||||| ||||  ||| || |||| |||||||    
T  30080201 tcaacacattaaaactttaaaat-gaactttttctacataaaatttctaaattattttttctcttaaatccttaacaa 30080125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 245
Target Start/End: Complemental strand, 10316130 - 10316038
Alignment:
Q  153 aattgtatagtcaacacattgaaacttaaaaatagaactttttccacataaaatttataaataatttactcttttgaatctttaacaagtgcc 245  Q
    |||||| || ||||| |||||||| || ||||  |||| ||||  || |||||||||||||| ||||| ||||||||| | |||||| |||||    
T  10316130 aattgtgtaatcaacgcattgaaattttaaaaatgaacattttgtacttaaaatttataaattatttattcttttgaaaccttaacatgtgcc 10316038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 238
Target Start/End: Original strand, 46578956 - 46579080
Alignment:
Q  114 cacttgtttagaaattcaaaaaagaaactttttattgagaattgtatagtcaacacattgaaacttaaaaatagaactttttccacataaaatttataaa 213  Q
    ||||||||||||| || ||| ||||||||||||||| | | |||| |  |||  ||||||||| ||||||||  ||| |||||  ||| ||||| |||||    
T  46578956 cacttgtttagaagtttaaagaagaaactttttattaaaatttgtgttttcactacattgaaaattaaaaatgaaacattttctccatgaaattcataaa 46579055  T
Q  214 taatttactcttttgaatctttaac 238  Q
    | |||| || |||| |||| |||||    
T  46579056 ttatttcctattttaaatccttaac 46579080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 115 - 245
Target Start/End: Complemental strand, 39575595 - 39575465
Alignment:
Q  115 acttgtttagaaattcaaaaaagaaactttttattgagaattgtatagtcaacacattgaaacttaaaaatagaactttttccacataaaatttataaat 214  Q
    |||||||||||| | |||| |||||||||||| |||  |||||| || | ||||||||||||||| ||||   ||||||||  |||||||||||||||||    
T  39575595 acttgtttagaagtccaaataagaaactttttcttggaaattgtgtatttaacacattgaaacttcaaaaagaaactttttatacataaaatttataaat 39575496  T
Q  215 aatttactcttttgaatctttaacaagtgcc 245  Q
     |||| |||||||||||| |||| |||||||    
T  39575495 tatttcctcttttgaatccttaataagtgcc 39575465  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 245
Target Start/End: Original strand, 3855960 - 3856070
Alignment:
Q  135 aagaaactttttattgagaattgtatagtcaacacattgaaactt-aaaaatagaactttttccacataaaatttataaataatttactcttttgaatct 233  Q
    |||||| ||||| || | |||||| || ||||||||||||||||| ||||||| | ||||||  ||||||| ||||||||| |||| ||||||| |||      
T  3855960 aagaaattttttcttaaaaattgtgtattcaacacattgaaacttcaaaaatata-ctttttttacataaattttataaattatttcctcttttaaatac 3856058  T
Q  234 ttaacaagtgcc 245  Q
    ||||||||||||    
T  3856059 ttaacaagtgcc 3856070  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 3773047 - 3773109
Alignment:
Q  170 attgaaacttaaaaatagaactttttccacataaaatttataaataatttactcttttgaatc 232  Q
    |||||||||| ||||  ||||||| || ||||||||||||||||| |||| ||||||||||||    
T  3773047 attgaaactttaaaaatgaactttatctacataaaatttataaattattttctcttttgaatc 3773109  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 219
Target Start/End: Complemental strand, 6913481 - 6913416
Alignment:
Q  153 aattgtatagtcaacacattgaaacttaaaaatagaactttttccacataaaatttataaataattt 219  Q
    |||||| || ||||||||||||||||||| || ||||| ||||| ||||||||||||||||| ||||    
T  6913481 aattgtgtattcaacacattgaaacttaataaaagaac-ttttctacataaaatttataaattattt 6913416  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 244
Target Start/End: Original strand, 37534387 - 37534545
Alignment:
Q  87 gagaaacgctaaaaagtgtcattgaaacacttgtttagaaattcaaaaaagaaactttttattgagaattgtatagtcaacacattgaaactt-aaaaat 185  Q
    |||||| ||||| |||||||||||    ||||||| |||| |  |||||| ||| ||||| |||| |||| | || |||||| ||| |||||| |||||     
T  37534387 gagaaatgctaacaagtgtcattggtgtacttgttcagaagtctaaaaaataaaatttttcttgaaaattttgtattcaacagattaaaacttcaaaaag 37534486  T
Q  186 agaactttttccacataaaatttataaataatttactcttttgaatctttaacaagtgc 244  Q
    | |  |||||| ||||||| ||||||||| ||||| ||| ||||||| |||||||||||    
T  37534487 atatttttttctacataaattttataaattatttattctcttgaatccttaacaagtgc 37534545  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 27888210 - 27888162
Alignment:
Q  192 ttttccacataaaatttataaataatttactcttttgaatctttaacaa 240  Q
    ||||| ||||||||||||||||| ||||| |||||| ||||||||||||    
T  27888210 ttttctacataaaatttataaattatttattcttttaaatctttaacaa 27888162  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 41226776 - 41226736
Alignment:
Q  200 ataaaatttataaataatttactcttttgaatctttaacaa 240  Q
    |||||||||||||||||||||||||||| ||| ||||||||    
T  41226776 ataaaatttataaataatttactcttttaaatatttaacaa 41226736  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 29735781 - 29735728
Alignment:
Q  191 tttttccacataaaatttataaataatttactcttttgaatctttaacaagtgc 244  Q
    |||||| | ||||||||||||||| |||| ||||||| |||| |||||||||||    
T  29735781 tttttctatataaaatttataaattatttcctcttttaaatcattaacaagtgc 29735728  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 239
Target Start/End: Original strand, 41311763 - 41311811
Alignment:
Q  191 tttttccacataaaatttataaataatttactcttttgaatctttaaca 239  Q
    |||||| ||||||||||||||||| ||||||  ||||||||| ||||||    
T  41311763 tttttctacataaaatttataaatcatttacatttttgaatccttaaca 41311811  T

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Target: chr3 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 114 - 245
Target Start/End: Original strand, 31375490 - 31375621
Alignment:
Q  114 cacttgtttagaaattcaaaaaagaaactttttattgagaattgtatagtcaacacattgaaacttaaaaatagaactttttccacataaaatttataaa 213  Q
    ||||||||||||| |  ||| |||||| ||||| |||  |||||| || ||||||||||||||||| ||||  |||| ||||| |||||| ||||| |||    
T  31375490 cacttgtttagaagtctaaataagaaattttttcttggaaattgtgtattcaacacattgaaactttaaaaaggaacattttctacataagatttacaaa 31375589  T
Q  214 taatttactcttttgaatctttaacaagtgcc 245  Q
    |||||| ||||| |||||| ||||||||||||    
T  31375590 taatttcctcttctgaatccttaacaagtgcc 31375621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 226
Target Start/End: Original strand, 48600599 - 48600709
Alignment:
Q  114 cacttgtttagaaattcaaaaaagaaactttttattgagaattgtatagtcaacacattgaaacttaaaaatagaactttttccacataaaatttataaa 213  Q
    ||||||||||||| | ||||||||||||||||| |||| |||  |||  |||| |||||||||||| ||||   || |||||| || |||||||||||||    
T  48600599 cacttgtttagaagtccaaaaaagaaactttttcttgaaaat--tatgttcaatacattgaaactttaaaaagtaattttttctacgtaaaatttataaa 48600696  T
Q  214 taatttactcttt 226  Q
    | |||| ||||||    
T  48600697 ttatttcctcttt 48600709  T

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Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 113 - 231
Target Start/End: Original strand, 45185424 - 45185541
Alignment:
Q  113 acacttgtttagaaattcaaaaaagaaactttttattgagaattgtatagtcaacacattgaaacttaaaaatagaactttttccacataaaatttataa 212  Q
    |||||||||||||| ||  |||||||||||||||||||  ||||||||| |||||| ||| |||||| |||| ||||  || |  |||||||||||||||    
T  45185424 acacttgtttagaagttacaaaaagaaactttttattggaaattgtatattcaacatattaaaactttaaaa-agaaaattatttacataaaatttataa 45185522  T
Q  213 ataatttactcttttgaat 231  Q
    |||||||  ||||||||||    
T  45185523 ataattttatcttttgaat 45185541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 100 - 245
Target Start/End: Original strand, 31087047 - 31087192
Alignment:
Q  100 aagtgtcattgaaacacttgtttagaaattcaaaaaagaaactttttattgagaattgtatagtcaacacattgaaacttaaaaatagaactttttccac 199  Q
    ||||||||||||| ||||| |||| || |  |||||| ||| ||||| || | | |||| || |||| ||||| |||||| |||| | |||||||||       
T  31087047 aagtgtcattgaagcacttctttaaaagtcaaaaaaataaattttttttttaaagttgtgtattcaatacattaaaactttaaaaaaaaactttttcttt 31087146  T
Q  200 ataaaatttataaataatttactcttttgaatctttaacaagtgcc 245  Q
    ||||||||| ||||| |||| |||||||||| || |||||||||||    
T  31087147 ataaaatttgtaaatcatttcctcttttgaacctgtaacaagtgcc 31087192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 142 - 245
Target Start/End: Original strand, 7176511 - 7176615
Alignment:
Q  142 tttttattgagaattgtatagtcaacacattgaaacttaaaaatagaactttttccacataaaatttataaataatttactc-ttttgaatctttaacaa 240  Q
    ||||| |||| |||||| || ||||||| ||||||||| |||| |||||||| |   | |||||||||||||| |||| ||| ||||||||| |||||||    
T  7176511 ttttttttgaaaattgtgtattcaacacgttgaaacttcaaaaaagaactttatttgcctaaaatttataaattatttcctctttttgaatccttaacaa 7176610  T
Q  241 gtgcc 245  Q
    |||||    
T  7176611 gtgcc 7176615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 240
Target Start/End: Original strand, 9752634 - 9752676
Alignment:
Q  198 acataaaatttataaataatttactcttttgaatctttaacaa 240  Q
    |||||||| |||||||| |||| ||||||||||||||||||||    
T  9752634 acataaaacttataaatcattttctcttttgaatctttaacaa 9752676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 24265139 - 24265180
Alignment:
Q  199 cataaaatttataaataatttactcttttgaatctttaacaa 240  Q
    ||||| ||||||||||||||| ||||||| ||||||||||||    
T  24265139 cataagatttataaataattttctctttttaatctttaacaa 24265180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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