View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15038_low_4 (Length: 545)
Name: NF15038_low_4
Description: NF15038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15038_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 19 - 331
Target Start/End: Complemental strand, 42631813 - 42631503
Alignment:
| Q |
19 |
ggtccatactttgatctttaatcgttgcatatgagaaaatatatattggaatatgtcatgtccttatatgaatttgagttacctaaagatataaatattt |
118 |
Q |
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| T |
42631813 |
ggtccatagtttgatctttaatcgttgcatatgagaaaatatatattggaatatgtcatgtccttatatgaatttgagttacctaaagatataaatattt |
42631714 |
T |
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| Q |
119 |
gcagttacatacgagggataaattgagttaacaaaacattgtactcgaactctactttaagaaaacaaataaaacataatgttaaatgagtctctctctt |
218 |
Q |
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| T |
42631713 |
gcagttacatactagggataaattgagttaa-gaaacattgtactcgaactctactttaggaaaacaaataaaacataatgttaaatcagtctctctctt |
42631615 |
T |
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| Q |
219 |
cttcattctatcttgattgagtatgtaaacctccacaacacagtcccaaatttacccaaagtaatttagaagattgacatataaccacacaattaatcta |
318 |
Q |
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| T |
42631614 |
cttcattctatcttaattgagtatgtgaacct-cacaacacagtcccaaatttacccaaagtaatttagaagattgacatataaccacacaattaatcta |
42631516 |
T |
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| Q |
319 |
atgatgattcatt |
331 |
Q |
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| T |
42631515 |
atgatgattcatt |
42631503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 336 - 456
Target Start/End: Complemental strand, 42631466 - 42631346
Alignment:
| Q |
336 |
taatgtccttcaaaccatcttgacaacccaactcaatcgcacattcactttagaccttttaaccacaactccgttaaaacaagagaccaaaattgttgat |
435 |
Q |
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| T |
42631466 |
taatgtccttcaaaccatcttgacaacccaactcaatcacacattcactttagaccttttaaccacaactccgttaaaacaagagaccaaaattgttgat |
42631367 |
T |
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| Q |
436 |
taaaacataagggatcaataa |
456 |
Q |
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| T |
42631366 |
taaaacataagggatcaataa |
42631346 |
T |
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