View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15038_low_41 (Length: 262)
Name: NF15038_low_41
Description: NF15038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15038_low_41 |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 11 - 229
Target Start/End: Original strand, 37473061 - 37473279
Alignment:
| Q |
11 |
cagagagagaaatatgaatgggaattgaaacgctttgaagatcttgagattagtgacttctctatgtatgacgatgacattgagccttatatgtttatat |
110 |
Q |
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| T |
37473061 |
cagagagagaaatatgaatgggaatcgaaacgcgttgaagatcttgagatgagtgacttctctatgtttgacgatgacattgagccttttatgtttatat |
37473160 |
T |
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| Q |
111 |
gcgcgcgctttatttacaagaataaggcccagattcaaaaagataaggagattgaagtagccatggctgagtatcgtgagtgctctcgcaacctaagtgt |
210 |
Q |
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| T |
37473161 |
gcgcgcgctttatttacaagaataaggcccagattcaaaaagataaggagattgaagtagccatggctgagtatcgtgagtgctctcgcaacctaagtgt |
37473260 |
T |
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| Q |
211 |
aagtaactcatctatctat |
229 |
Q |
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||||||||||||||||||| |
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| T |
37473261 |
aagtaactcatctatctat |
37473279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 20 - 229
Target Start/End: Original strand, 37481786 - 37481995
Alignment:
| Q |
20 |
aaatatgaatgggaattgaaacgctttgaagatcttgagattagtgacttctctatgtatgacgatgacattgagccttatatgtttatatgcgcgcgct |
119 |
Q |
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| T |
37481786 |
aaatatgaatgggaatcgaaacgcgtcgaagatcttgatatgagtgacttctctatgtttgacgatgacattgagccttttatgtttatatgcgcgcgct |
37481885 |
T |
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| Q |
120 |
ttatttacaagaataaggcccagattcaaaaagataaggagattgaagtagccatggctgagtatcgtgagtgctctcgcaacctaagtgtaagtaactc |
219 |
Q |
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| T |
37481886 |
ttatttacaagaataaggcccagattcaaaaagataaggagattgaagtagccatggctgagtatcgtgagtgctctcgcaacctaagtgtaagtaactc |
37481985 |
T |
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| Q |
220 |
atctatctat |
229 |
Q |
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|||||||||| |
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| T |
37481986 |
atctatctat |
37481995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 13 - 163
Target Start/End: Original strand, 37492700 - 37492850
Alignment:
| Q |
13 |
gagagagaaatatgaatgggaattgaaacgctttgaagatcttgagattagtgacttctctatgtatgacgatgacattgagccttatatgtttatatgc |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| || |
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| T |
37492700 |
gagagagaaatatgaatgggaattgaaacgctttgaagatcttgagattagtgacttctctatgtatgacgatgacattaagccttttatgtttatgtgt |
37492799 |
T |
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| Q |
113 |
gcgcgctttatttacaagaataaggcccagattcaaaaagataaggagatt |
163 |
Q |
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| ||| |||| || ||||||||||| ||||||||| |||||||||||||| |
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| T |
37492800 |
gggcgatttacgtataagaataaggctcagattcaacaagataaggagatt |
37492850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 20 - 183
Target Start/End: Original strand, 37487483 - 37487646
Alignment:
| Q |
20 |
aaatatgaatgggaattgaaacgctttgaagatcttgagattagtgacttctctatgtatgacgatgacattgagccttatatgtttatatgcgcgcgct |
119 |
Q |
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||||||| |||||||| ||||||| || ||||||||||||||||||||| || | || |||||||||||||| ||||| ||| |||| ||| | |||| |
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| T |
37487483 |
aaatatgtatgggaatcgaaacgcgttaaagatcttgagattagtgactgctttgtgcatgacgatgacattaagcctcttatatttaaatgtgatcgct |
37487582 |
T |
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| Q |
120 |
ttatttacaagaataaggcccagattcaaaaagataaggagattgaagtagccatggctgagta |
183 |
Q |
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| || | ||||||||| |||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
37487583 |
tcgagtataggaataaggcacagattcaaaaagataaggagattaaagtcgccatggctgagta |
37487646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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