View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15038_low_44 (Length: 254)
Name: NF15038_low_44
Description: NF15038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15038_low_44 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 3e-97; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 4 - 241
Target Start/End: Complemental strand, 50582604 - 50582366
Alignment:
| Q |
4 |
gtaagggtttgactacctttgtttttgcttgtcaaaaaggaaaatcaagcatgattattaataaatgcaagcctcatatttgcttaatgaaaatttacga |
103 |
Q |
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| T |
50582604 |
gtaagggtttgactacctttgtttttgcttgtcaaaaaggaaaatcaagcatgattattaataaatgcaagcctcatatttgcttaatgaaaatttaaga |
50582505 |
T |
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| Q |
104 |
taaaaactaatgtttcatatttaataaatgagagaaaaattggaaacataaaattaacaacggcccctc-nnnnnnnnntaatgtaatgaaatgacgaag |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||| |
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| T |
50582504 |
taaaaactaatgtttcatatttaataaatgagagaaaaattggaaacataaaattaataatggcccctcaaaaaaaaaataatgtaatgaaatgacgaag |
50582405 |
T |
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| Q |
203 |
cgacaattaatttgctaaaacagatattaaactaaagtg |
241 |
Q |
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| T |
50582404 |
cgacatttaatttgctaaagcaaatattaaactaaagtg |
50582366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 37 - 160
Target Start/End: Complemental strand, 50823663 - 50823540
Alignment:
| Q |
37 |
aaaaaggaaaatcaagcatgattattaataaatgcaagcctcatatttgcttaatgaaaatttacgataaaaactaatgtttcatatttaataaatgaga |
136 |
Q |
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||||||||| || |||||| ||| || |||||||||||||||||||||| |||||||||| ||| ||||||||||||||||| | |||||||||||| |
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| T |
50823663 |
aaaaaggaacattaagcattattgttgataaatgcaagcctcatatttggttaatgaaaagttaaaataaaaactaatgtttcgtccataataaatgaga |
50823564 |
T |
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| Q |
137 |
gaaaaattggaaacataaaattaa |
160 |
Q |
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| T |
50823563 |
gaaaaattggaaatataaaattaa |
50823540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 37 - 160
Target Start/End: Original strand, 50852198 - 50852321
Alignment:
| Q |
37 |
aaaaaggaaaatcaagcatgattattaataaatgcaagcctcatatttgcttaatgaaaatttacgataaaaactaatgtttcatatttaataaatgaga |
136 |
Q |
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||||||||| || |||||| ||| || |||||||||||||||||||||| |||||||||| ||| ||||||||||||||||| | |||||||||||| |
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| T |
50852198 |
aaaaaggaacattaagcattattgttgataaatgcaagcctcatatttggttaatgaaaagttaaaataaaaactaatgtttcgtccataataaatgaga |
50852297 |
T |
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| Q |
137 |
gaaaaattggaaacataaaattaa |
160 |
Q |
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||||||||||||| |||||||||| |
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| T |
50852298 |
gaaaaattggaaatataaaattaa |
50852321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 224
Target Start/End: Complemental strand, 50823537 - 50823497
Alignment:
| Q |
184 |
atgtaatgaaatgacgaagcgacaattaatttgctaaaaca |
224 |
Q |
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||||||||||||||| |||||||| |||||||||||||||| |
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| T |
50823537 |
atgtaatgaaatgacaaagcgacacttaatttgctaaaaca |
50823497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 224
Target Start/End: Original strand, 50852324 - 50852364
Alignment:
| Q |
184 |
atgtaatgaaatgacgaagcgacaattaatttgctaaaaca |
224 |
Q |
| |
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||||||||||||||| |||||||| |||||||||||||||| |
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| T |
50852324 |
atgtaatgaaatgacaaagcgacacttaatttgctaaaaca |
50852364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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