View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15038_low_45 (Length: 253)
Name: NF15038_low_45
Description: NF15038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15038_low_45 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 167; Significance: 2e-89; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 38375204 - 38374997
Alignment:
| Q |
18 |
gaatgaatgtcaaattttacaaacttgtaactcagcatattctggtgacggtgattctgaaccaccaaaaaagaagcttaaaaggtttaatgtttggaac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38375204 |
gaatgaatgtcaaattttacaaacttgtaactcagcatattctggtgacggtgattctgaaccaccaaaaaagaagcttaaaaggtttaatgtttggaac |
38375105 |
T |
|
| Q |
118 |
tactttgtcaaaattaataaaaatggaaaagaaatgtgtgagtgtatgacttgtgggaaactgtttacttgtggcggaagatcaggtatctctcatctaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
38375104 |
tactttgtcaaaattaataaaaatggaaaagaaatgtgtgagtgtatgactt------------------gtggcggaagatcaggtatctctcatctaa |
38375023 |
T |
|
| Q |
218 |
tccaacatattcccaaatgtcctttg |
243 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
38375022 |
tccaacatattcccaaatgtcctttg |
38374997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 52 - 243
Target Start/End: Complemental strand, 38380361 - 38380170
Alignment:
| Q |
52 |
gcatattctggtgacggtgattctgaaccaccaaaaaagaagcttaaaaggtttaatgtttggaactactttgtcaaaattaataaaaatggaaaagaaa |
151 |
Q |
| |
|
|||||||||| | | |||||||| ||||| ||||| || | ||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||| |
|
|
| T |
38380361 |
gcatattctgattatggtgattccgaacctccaaagaaaaggcttaaaaggtttaatgtttggaactactttgtcaaagttcataaagatggaaaagaaa |
38380262 |
T |
|
| Q |
152 |
tgtgtgagtgtatgacttgtgggaaactgtttacttgtggcggaagatcaggtatctctcatctaatccaacatattcccaaatgtcctttg |
243 |
Q |
| |
|
||||||| |||||||||||||||| | |||||||||||| ||||| ||||||| ||||||||||| || |||||||||| |||||||||| |
|
|
| T |
38380261 |
tgtgtgaatgtatgacttgtgggagagtgtttacttgtgatggaaggtcaggtaactctcatctaaacctacatattcccgtatgtcctttg |
38380170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 43 - 243
Target Start/End: Complemental strand, 38370477 - 38370277
Alignment:
| Q |
43 |
tgtaactcagcatattctggtgacggtgattctgaaccaccaaaaaagaagcttaaaaggtttaatgtttggaactactttgtcaaaattaataaaaatg |
142 |
Q |
| |
|
||||||||||||||||||| || ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| | | ||| |
|
|
| T |
38370477 |
tgtaactcagcatattctgatg---gtgatcatgaaccaccaaataagaagcttaaaaggtttaatgtttggaactactttgttaaaattgaagcagatg |
38370381 |
T |
|
| Q |
143 |
gaaaagaaatgtgtgagtgtatgacttgtgggaaactgtttacttgtggcggaagatcaggtatctctcatctaa------tccaacatattcccaaatg |
236 |
Q |
| |
|
| |||||| ||||||| |||| ||||||||||||| ||||| || | ||||| ||||||| |||||||||| ||||||||||| ||||||| |
|
|
| T |
38370380 |
gtaaagaactgtgtgaatgtaaaacttgtgggaaacagtttatttct---ggaaggacaggtatatctcatctaaaccaagtccaacatattaccaaatg |
38370284 |
T |
|
| Q |
237 |
tcctttg |
243 |
Q |
| |
|
||||||| |
|
|
| T |
38370283 |
tcctttg |
38370277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University