View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15038_low_52 (Length: 241)
Name: NF15038_low_52
Description: NF15038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15038_low_52 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 3 - 226
Target Start/End: Complemental strand, 49673097 - 49672874
Alignment:
| Q |
3 |
aacaagggcacgcaagaagatttgcgtgtgtttgcaacccaacccatttatttcaaccattaatatagcatattcttgaacagttgaaaatacaacggat |
102 |
Q |
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| T |
49673097 |
aacaagggcacgcaagaagatttgtgtgtgtttgcaacccaacccaaatatttcaaccattaatatagcatattcttgaacagttgaaaatacaacggat |
49672998 |
T |
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| Q |
103 |
catgaagagaaggagataaaaattaaaattctcaaaagcaaatacaacaactaccgaaagaaatgacatgaacaaaaacctgtgaagaagatcggtgcaa |
202 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49672997 |
catgaagagaaggagataaaaattaaaattcacaaaagcaaatacaacaactactgaaagaaatgacatgaacaaaaacctgtgaagaagatcggtgcaa |
49672898 |
T |
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| Q |
203 |
ctgacctttgtcgacaatgttttt |
226 |
Q |
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|||||||||||||||||||||||| |
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| T |
49672897 |
ctgacctttgtcgacaatgttttt |
49672874 |
T |
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