View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15038_low_53 (Length: 239)
Name: NF15038_low_53
Description: NF15038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15038_low_53 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 181; Significance: 6e-98; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 37019565 - 37019782
Alignment:
| Q |
19 |
gcaacattagaagcaacaatctcaaagaaagttcttcaaccattgatgtttctgattcagataatggtatgtgctagtactagccattttcactcttttc |
118 |
Q |
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| T |
37019565 |
gcaacattagaagcaatagtctcaaagaaagttcttcaaccattgatgtttctgattcagataatggtatgtgctagtactagccattttcactcttttc |
37019664 |
T |
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| Q |
119 |
tttacaatatacttactactttaattttgtgagggtgggcgtgcgtgaatatttattttaaactgtt-aataaataagagaatttttacttagatgaaga |
217 |
Q |
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| T |
37019665 |
tttacaata----tactactttaattttgtgagggtgggcgtgcgtgaatatttattttaaattgttaaataaataagagaatttttacttagatgaaga |
37019760 |
T |
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| Q |
218 |
agattcagattctttcaagtct |
239 |
Q |
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| T |
37019761 |
agatttagattctttcaagtct |
37019782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 37041491 - 37041713
Alignment:
| Q |
19 |
gcaacattagaagcaacaatctcaaagaaagttcttcaaccattgatgtttctgattcagataatggtatgtg------ctagtactagccattttcact |
112 |
Q |
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| T |
37041491 |
gcaacagtagcaacaataatctcaaagaaagttcttcaaccattgatgtttctgattctgataatggtatgtgtttatactagttctagtcattttcact |
37041590 |
T |
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| Q |
113 |
cttttctttacaatatacttactactttaattttgtgagggtgggcgtgcgtgaatatttattttaaactgttaataaataagagaatttttacttagat |
212 |
Q |
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| T |
37041591 |
cttttctttacaatg--ctatctact--acttttgtgagggtgggcgtgcatgaatacttattttaaactgttaataagtaagataatttttactcagat |
37041686 |
T |
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| Q |
213 |
gaagaagattcagattctttcaagtct |
239 |
Q |
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| T |
37041687 |
gaaaaagattcagattcatgcaagtct |
37041713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 38 - 194
Target Start/End: Original strand, 37024532 - 37024691
Alignment:
| Q |
38 |
tctcaaagaaagttcttcaaccattgatgtttctgattcagataatggtatgtg------ctagtactagccattttcactcttttctttacaa-tatac |
130 |
Q |
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||||| |||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| ||||||| || ||| |
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| T |
37024532 |
tctcatagaaagttcttcaaccattgatgtttctgattcagaaaatggcatgtgtttatactagtactagccattttcactctcttctttataacgatat |
37024631 |
T |
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| Q |
131 |
ttactactttaattttgtgagggtgggcgt-gcgtgaatatttattttaaactgttaataaataa |
194 |
Q |
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| T |
37024632 |
atactac-----ttttgtgagggtgggcgtggcgtgaatacttattttaaaccgttaataaataa |
37024691 |
T |
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