View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15038_low_55 (Length: 236)

Name: NF15038_low_55
Description: NF15038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15038_low_55
NF15038_low_55
[»] chr3 (4 HSPs)
chr3 (1-222)||(1845167-1845405)
chr3 (1-70)||(41383823-41383892)
chr3 (1-70)||(1837998-1838066)
chr3 (176-222)||(41389539-41389585)
[»] chr6 (3 HSPs)
chr6 (1-70)||(18632673-18632742)
chr6 (1-70)||(18639334-18639402)
chr6 (97-135)||(34993910-34993948)
[»] chr4 (3 HSPs)
chr4 (97-132)||(22729793-22729828)
chr4 (97-132)||(22756862-22756897)
chr4 (94-132)||(28293161-28293199)
[»] chr2 (1 HSPs)
chr2 (97-135)||(58105-58143)
[»] chr1 (2 HSPs)
chr1 (97-135)||(10758231-10758269)
chr1 (133-166)||(13876899-13876932)


Alignment Details
Target: chr3 (Bit Score: 163; Significance: 3e-87; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 1845167 - 1845405
Alignment:
Q  1 attaagagattcacaatgcatggaatcaccattaccatgatgctaataattaatatagacaaatacctct-----------------attattggataca 83  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 |||||||||||||    
T  1845167 attaagagattcacaatgcatggaatcaccattaccatgatgctaataattaatatagacaaatacctctattattggatacactctattattggataca 1845266  T
Q  84 ctttgatgtgggtaaatgtgcaatacaccatataatttgatgtggcatgaataatcaatgattgatcatttaacttcaccatataattttccttgctaaa 183  Q
    || ||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  1845267 ctctgatgtgagtaaatatgcaatacaccatataatctgatgtggcatgaataatcaatgattggtcatttaacttcaccatataattttccttgctaaa 1845366  T
Q  184 aaacctttcaaatctttttcagaaagcattgttcttact 222  Q
    |||||||||||||||||||||||||||||||||||||||    
T  1845367 aaacctttcaaatctttttcagaaagcattgttcttact 1845405  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 41383823 - 41383892
Alignment:
Q  1 attaagagattcacaatgcatggaatcaccattaccatgatgctaataattaatatagacaaatacctct 70  Q
    ||||||| |||||||||||||||||||| ||||||||||||||| |||| ||||||||| ||||||||||    
T  41383823 attaagatattcacaatgcatggaatcatcattaccatgatgcttataactaatatagaaaaatacctct 41383892  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 1838066 - 1837998
Alignment:
Q  1 attaagagattcacaatgcatggaatcaccattaccatgatgctaataattaatatagacaaatacctct 70  Q
    |||||||  ||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||    
T  1838066 attaagatcttcacaatgcatggaatcatcattaccatgatgctaataattaatattga-aaatacctct 1837998  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 222
Target Start/End: Original strand, 41389539 - 41389585
Alignment:
Q  176 ttgctaaaaaacctttcaaatctttttcagaaagcattgttcttact 222  Q
    |||| |||||||||||||||||||||||| |||||| || |||||||    
T  41389539 ttgcaaaaaaacctttcaaatctttttcacaaagcagtgctcttact 41389585  T

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Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 18632742 - 18632673
Alignment:
Q  1 attaagagattcacaatgcatggaatcaccattaccatgatgctaataattaatatagacaaatacctct 70  Q
    |||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  18632742 attacgagatttacaatgcaaggaatcaccattaccatgatgctaataattaatatagacaaatacctct 18632673  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 18639334 - 18639402
Alignment:
Q  1 attaagagattcacaatgcatggaatcaccattaccatgatgctaataattaatatagacaaatacctct 70  Q
    |||||||  ||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||    
T  18639334 attaagatcttcacaatgcatggaatcatcattaccatgatgctaataattaatattga-aaatacctct 18639402  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 135
Target Start/End: Complemental strand, 34993948 - 34993910
Alignment:
Q  97 aaatgtgcaatacaccatataatttgatgtggcatgaat 135  Q
    ||||||||||||||||||||||| ||||||| |||||||    
T  34993948 aaatgtgcaatacaccatataatctgatgtgacatgaat 34993910  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 132
Target Start/End: Complemental strand, 22729828 - 22729793
Alignment:
Q  97 aaatgtgcaatacaccatataatttgatgtggcatg 132  Q
    |||||||||||||||| |||||||||||||||||||    
T  22729828 aaatgtgcaatacaccgtataatttgatgtggcatg 22729793  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 132
Target Start/End: Original strand, 22756862 - 22756897
Alignment:
Q  97 aaatgtgcaatacaccatataatttgatgtggcatg 132  Q
    |||||||||||||||| |||||||||||||||||||    
T  22756862 aaatgtgcaatacaccgtataatttgatgtggcatg 22756897  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 132
Target Start/End: Original strand, 28293161 - 28293199
Alignment:
Q  94 ggtaaatgtgcaatacaccatataatttgatgtggcatg 132  Q
    ||||||||||||||||| ||||||||||||||| |||||    
T  28293161 ggtaaatgtgcaatacatcatataatttgatgtagcatg 28293199  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 135
Target Start/End: Complemental strand, 58143 - 58105
Alignment:
Q  97 aaatgtgcaatacaccatataatttgatgtggcatgaat 135  Q
    |||||||||||||||||||||||||||| || |||||||    
T  58143 aaatgtgcaatacaccatataatttgatctgacatgaat 58105  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 135
Target Start/End: Original strand, 10758231 - 10758269
Alignment:
Q  97 aaatgtgcaatacaccatataatttgatgtggcatgaat 135  Q
    |||||| |||||||||||||||| |||||||||||||||    
T  10758231 aaatgttcaatacaccatataatctgatgtggcatgaat 10758269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 166
Target Start/End: Original strand, 13876899 - 13876932
Alignment:
Q  133 aataatcaatgattgatcatttaacttcaccata 166  Q
    |||| |||||||||||||||||||||||||||||    
T  13876899 aatactcaatgattgatcatttaacttcaccata 13876932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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