View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15038_low_57 (Length: 223)
Name: NF15038_low_57
Description: NF15038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15038_low_57 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 5177899 - 5177696
Alignment:
| Q |
1 |
gaaaaccatatgttaacaatatacataaccatataatttaactttgtaaaatcaggaaaagcagtggattctcaagaggggcttccatgtatagaggagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5177899 |
gaaaaccatatgttaacaatatacataaccatataatttaactttgtaaaatcaggaaaagcagtggattctcaagaggggcttccatgtatagaggagt |
5177800 |
T |
|
| Q |
101 |
aacaaggtgagtctaacatcacatgcattgcactaatttaattttaatatatgatttatatatgaaaaataaaattggctctgattattatctttgtagc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5177799 |
aacaaggtgagtctaacatcacatgcattgcactaatttaa-tttaatatatgatttatatatgaaaaataaaattggctctgattattatctttgtagc |
5177701 |
T |
|
| Q |
201 |
agaca |
205 |
Q |
| |
|
||||| |
|
|
| T |
5177700 |
agaca |
5177696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 51 - 108
Target Start/End: Original strand, 40190344 - 40190401
Alignment:
| Q |
51 |
atcaggaaaagcagtggattctcaagaggggcttccatgtatagaggagtaacaaggt |
108 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
40190344 |
atcagaaaaagcagtggattctcaagaggggcatccatgtacagaggagtaacaaggt |
40190401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University