View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15038_low_59 (Length: 215)
Name: NF15038_low_59
Description: NF15038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15038_low_59 |
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| [»] scaffold1063 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 164; Significance: 8e-88; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 10 - 201
Target Start/End: Original strand, 6942930 - 6943121
Alignment:
| Q |
10 |
cgagtgatatgaaatggaaaccatattgtcgacaacttgaagcaaaaatgacatctttccataagcatcacagtatccgtatgcttcatcaaaacctaca |
109 |
Q |
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| T |
6942930 |
cgagagatttgaaattgaaaccatattgtcgacaacttgaagcaaaaatggcatctttccataagcatcacagtatccgtatgcttcatccaaagctaca |
6943029 |
T |
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| Q |
110 |
atatatggtagcaacaataacatgtcattatatccaaatacttctgagtaggctttctttaaagtgtaacctgaaggatttttcaagtaatt |
201 |
Q |
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| T |
6943030 |
atatatggtagcaacaataacatgtcattatatccaaatacttctgattaggctttctttaaagtgtaacctgaaggatttttcaagtaatt |
6943121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 10 - 201
Target Start/End: Original strand, 6939755 - 6939946
Alignment:
| Q |
10 |
cgagtgatatgaaatggaaaccatattgtcgacaacttgaagcaaaaatgacatctttccataagcatcacagtatccgtatgcttcatcaaaacctaca |
109 |
Q |
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| T |
6939755 |
cgagagatttgaaattgaaaccatattgtcgacaacttgaagcaaaaatggcatctttccataagcatcacggtatccgtatgcttcatccaaacctaca |
6939854 |
T |
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| Q |
110 |
atatatggtagcaacaataacatgtcattatatccaaatacttctgagtaggctttctttaaagtgtaacctgaaggatttttcaagtaatt |
201 |
Q |
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| T |
6939855 |
atatatggtagcaacaataacatgtcattatatccaaatacttctgattaggctttctttgaagtgtaacctgaaggatttttcaagtaatt |
6939946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 84
Target Start/End: Complemental strand, 6787756 - 6787696
Alignment:
| Q |
26 |
gaaaccatattgtcgacaacttgaagca--aaaatgacatctttccataagcatcacagta |
84 |
Q |
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| T |
6787756 |
gaaaccatattgtcgacaacttcaaacagaaaaatggcatccttccataagcatcacagta |
6787696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1063 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: scaffold1063
Description:
Target: scaffold1063; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 53 - 122
Target Start/End: Complemental strand, 3106 - 3037
Alignment:
| Q |
53 |
aaaaatgacatctttccataagcatcacagtatccgtatgcttcatcaaaacctacaatatatggtagca |
122 |
Q |
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| T |
3106 |
aaaaatggcatctttccataagcatcacagtatcctattgcttcatccaaacctacaacatatggtagca |
3037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1063; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 201
Target Start/End: Complemental strand, 3023 - 2980
Alignment:
| Q |
158 |
taggctttctttaaagtgtaacctgaaggatttttcaagtaatt |
201 |
Q |
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| T |
3023 |
taggctttctttaaagtataactcgaaggatttttcaagtaatt |
2980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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