View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15038_low_60 (Length: 213)

Name: NF15038_low_60
Description: NF15038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15038_low_60
NF15038_low_60
[»] chr1 (2 HSPs)
chr1 (49-213)||(29211179-29211343)
chr1 (1-40)||(29211365-29211404)


Alignment Details
Target: chr1 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 49 - 213
Target Start/End: Complemental strand, 29211343 - 29211179
Alignment:
Q  49 tgtttaccacgtataggacatgcaatttcatgttgagtttgaaaatacaatttattttcaaataaaatcaattatacgaaaataaagaaatgcttgcttc 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29211343 tgtttaccacgtataggacatgcaatttcatgttgagtttgaaaatactttttattttcaaataaaatcaattatacgaaaataaagaaatgcttgcttc 29211244  T
Q  149 atcagactcgttattaatttatagctagaatttgggctacagactgcacttctggaataaattac 213  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29211243 atctgactcgttattaatttatagctagaatttgggctacagactgcacttctggaataaattac 29211179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 29211404 - 29211365
Alignment:
Q  1 tatgttcatctagatctagaatagactcttacatgatctt 40  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  29211404 tatgttcatctagatctagaatagactcttgcatgatctt 29211365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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