View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15038_low_61 (Length: 211)
Name: NF15038_low_61
Description: NF15038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15038_low_61 |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 22 - 196
Target Start/End: Original strand, 36231846 - 36232020
Alignment:
| Q |
22 |
tccatgagtttgtatttatgtatttcttcccttatagcattaagttcacctattaatgattgaacttgttgttgcaaagatgaaattgcacccatgcatc |
121 |
Q |
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| T |
36231846 |
tccatgagtttgtatttatgtatttcttcccttatagcattaagttcacctattaatgattgaacttgttgttgcaaagatgaaattgcacccatgcatc |
36231945 |
T |
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| Q |
122 |
cataaactggatctcttagtcttacatttgcttcataaactaaactatttgctgcatctgctctttgattctctg |
196 |
Q |
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| T |
36231946 |
cataaactggatctcttagtcttacatttgcttcataaactaaactatttgctgcatctgctctttgattctctg |
36232020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 79 - 188
Target Start/End: Original strand, 31868948 - 31869057
Alignment:
| Q |
79 |
gattgaacttgttgttgcaaagatgaaattgcacccatgcatccataaactggatctcttagtcttacatttgcttcataaactaaactatttgctgcat |
178 |
Q |
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| T |
31868948 |
gattggacttgttgttgtaatgatgatattgcacccatgcatccataaacaggatctcttaaccttaaattagcttcataaaccatactatttgctgcat |
31869047 |
T |
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| Q |
179 |
ctgctctttg |
188 |
Q |
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| T |
31869048 |
ctgctctttg |
31869057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 121 - 188
Target Start/End: Complemental strand, 35919729 - 35919662
Alignment:
| Q |
121 |
ccataaactggatctcttagtcttacatttgcttcataaactaaactatttgctgcatctgctctttg |
188 |
Q |
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| T |
35919729 |
ccataaactggatccctcactcttgcatttgcttcatagactaaactgtttactgcatctgctctttg |
35919662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 79 - 186
Target Start/End: Original strand, 43200646 - 43200753
Alignment:
| Q |
79 |
gattgaacttgttgttgcaaagatgaaattgcacccatgcatccataaactggatctcttagtcttacatttgcttcataaactaaactatttgctgcat |
178 |
Q |
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|||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| | |||||||||||||| |
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| T |
43200646 |
gattgaacctgttgttgcaatgcagaaattgcacccatgcatccataaactggatctcttagcctcacatttgcttcataaacaagactatttgctgcat |
43200745 |
T |
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| Q |
179 |
ctgctctt |
186 |
Q |
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|||||||| |
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| T |
43200746 |
ctgctctt |
43200753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 190
Target Start/End: Complemental strand, 26665914 - 26665842
Alignment:
| Q |
118 |
catccataaactggatctcttagtcttacatttgcttcataaactaaactatttgctgcatctgctctttgat |
190 |
Q |
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||||||||||| |||||||| | |||| ||||||||||| |||||||||| || |||| |||| |||||||| |
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| T |
26665914 |
catccataaacaggatctctcactcttgcatttgcttcaaaaactaaactgttcactgcttctgatctttgat |
26665842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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