View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15038_low_9 (Length: 447)
Name: NF15038_low_9
Description: NF15038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15038_low_9 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 16 - 447
Target Start/End: Original strand, 34572572 - 34572994
Alignment:
| Q |
16 |
caattaattcattccttcaatcaaagtgtattttaaactaaatttt-gtcatcacaaacaatgccaatgaaactgcacccccgccaacaacacaaaattg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34572572 |
caattaattcattccttcaatcaaagtgtattttaaactaaatttttgtcatcacaaacaatgccaatgaaactgcacccccgccaacaacacaaaattg |
34572671 |
T |
|
| Q |
115 |
acatgtcagcgatgtacagaaacagtgacattgggataacaataaaatgcctcatgcacattcactttgttaaagtttcagttcacatgtgatgttaatg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34572672 |
acatgtcagcgatgtacagaaacagtgacattgggacaacaataaaatgcctcatgcatattcactttgttaaagtttcagttcacatgtgatgttaatg |
34572771 |
T |
|
| Q |
215 |
tagaacaagttcacatatgttagttcctttgctagcaatgtgggact-aaaacactttttactttctttctactcctcacacctcacttgccactcactt |
313 |
Q |
| |
|
|||||||||||||||||||||| |||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34572772 |
tagaacaagttcacatatgttaattcctttggtggcaatgtgggactaaaaacactttttactttctttctactcctcacacctcacttgccactcactt |
34572871 |
T |
|
| Q |
314 |
gtaataatattacttgcagttccaacgagttccatatgcaaagcttttgtgctgctaaattaaaatcatgtttgggagttcagtattctgtttaaattgc |
413 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34572872 |
gtaataatattacttgc----------agttccatatgcaaagcttttgtgctgctaaattaaaatcatgtttgggagttcagtattctgtttaaattgc |
34572961 |
T |
|
| Q |
414 |
caaaacctattatcaagagccaggttcaatcaag |
447 |
Q |
| |
|
| ||||||| |||||||| ||||||||||||||| |
|
|
| T |
34572962 |
c-aaacctagtatcaagatccaggttcaatcaag |
34572994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 319
Target Start/End: Original strand, 34583329 - 34583358
Alignment:
| Q |
290 |
tcacacctcacttgccactcacttgtaata |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
34583329 |
tcacacctcacttgccactcacttgtaata |
34583358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 337 - 410
Target Start/End: Original strand, 38494105 - 38494180
Alignment:
| Q |
337 |
aacgagttccatatgcaaagcttttgtgctgctaaattaaaatcatgtttgggagttc--agtattctgtttaaat |
410 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||||||||| |||||| | |||| ||| |||||||||||| |
|
|
| T |
38494105 |
aacgagttccatatacaaagcttttgtgatgctaaattaaaattttgtttgtgtgttcatagtgttctgtttaaat |
38494180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 334 - 374
Target Start/End: Original strand, 38499473 - 38499513
Alignment:
| Q |
334 |
tccaacgagttccatatgcaaagcttttgtgctgctaaatt |
374 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
38499473 |
tccaatgagttccatatgcaaagcttttgtgctgctaaatt |
38499513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University