View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15039_high_1 (Length: 516)
Name: NF15039_high_1
Description: NF15039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15039_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 15 - 498
Target Start/End: Original strand, 46557302 - 46557788
Alignment:
| Q |
15 |
cagagacgtatgttagaagtagtaaaagagagttattaaaaccgcatgcagaggaatgaatgaatgtttgatttaccttgcacatgagaggttgtaattg |
114 |
Q |
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| T |
46557302 |
cagagacgtatgttagaagtagtaaaagagagttattaaaaccgcatgcagaggaatgaatgaatgtttgatttaccttgcacatgagaggttgtaattg |
46557401 |
T |
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| Q |
115 |
ttgttcttctggtggtagaggtggtggtgcttcttgaacaactactagttcgggtcttgtttctgttgcttccattgggaagtgaaaagaaacaagagcg |
214 |
Q |
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| T |
46557402 |
ttgttcttctggtggtagaggtggtggtgcttcttgaacaactactagttcgggtcttgtttctgttgcttccattgggaagtgaaaagaaacaagagcg |
46557501 |
T |
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| Q |
215 |
atgtttagaaagagaaagagaggaggttactaattaagaaca---aggctttaaggttaattttggtatataaaaggtgatcacgaagaagaatgggagg |
311 |
Q |
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| T |
46557502 |
atgtttagaaagagaaagagaggaggttactaattaagaacaaggaggctttaaggttaattttggtatataaaaggtgatcacgaagaagaatgggagg |
46557601 |
T |
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| Q |
312 |
agaatatcgttagaaattcctagatctttccagaataatataaagttatcatcattatcaccttataatagaatttaaaaatatcatggcatacaaatac |
411 |
Q |
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| T |
46557602 |
agaatatcgttagaaattcctagatctttccagaataatataaagttatcatcattatcaccttataatagaatttaaaaacatcatggcatacaaatac |
46557701 |
T |
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| Q |
412 |
ggaatcttatttgtagtgataaagatattgagtgttattcaaacaaatttaactaataccaattcatccatccacttggacactaca |
498 |
Q |
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| T |
46557702 |
ggaatcgtatttgtagtgataaagatactgagtgttattcaaacaaatttaactaataccaattcatccatccacttggacactaca |
46557788 |
T |
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