View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15039_high_11 (Length: 384)
Name: NF15039_high_11
Description: NF15039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15039_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 18 - 374
Target Start/End: Complemental strand, 12597040 - 12596684
Alignment:
| Q |
18 |
cttctatatcatgaactaacttcaccaaagacttgagttgttacatgaagccacatgaatggaaatttagattagatttttaaaatggacaacataaaaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12597040 |
cttctatatcatgaactaacttcaccaaagacttgagttgttacatgaagccacatgaatggaaatttagattagatttttaaaatggacaacataaaaa |
12596941 |
T |
|
| Q |
118 |
ttctttgtacaaagagaaacacttgtgagatattgaaaccaaacacaaaaagtccatgttcaaagacaagcacttgtgacataatgaaaccaaacatagt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12596940 |
ttctttgtacaaagagaaacacttgtgagatattgaaaccaaacacaaaaagtccatgttcaaagacaagcacttgtgacataatgaaaccaaacatagt |
12596841 |
T |
|
| Q |
218 |
tgttttcagccaattgatgggaaaagtaaaaaatattttaagaacaaacacagctgctgtatctttaatgatcatgtaagataataaaagaaattcaaaa |
317 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12596840 |
tgttttcagccaattgatgggaaaagttaaaaatattttaagaacaaacacagctgctgtatctttaatgatcatgtaagataataaaagaaattcaaaa |
12596741 |
T |
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| Q |
318 |
cacgatgtagagaaattcttacggtatggtcggtcaatacatcaactacatcttcat |
374 |
Q |
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| T |
12596740 |
cacgatgtagagaaattcttacggtatggtcggtcaatacatcaactacatcttcat |
12596684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 303 - 374
Target Start/End: Complemental strand, 3313866 - 3313795
Alignment:
| Q |
303 |
aaaagaaattcaaaacacgatgtagagaaattcttacggtatggtcggtcaatacatcaactacatcttcat |
374 |
Q |
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| T |
3313866 |
aaaataaattcaaaatgcaatgtagataaattcttacagtatggtcggtcagtacatcaactacatcctcat |
3313795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 348
Target Start/End: Original strand, 3392654 - 3392692
Alignment:
| Q |
310 |
attcaaaacacgatgtagagaaattcttacggtatggtc |
348 |
Q |
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|||||||| || ||||||||||||||||||||||||||| |
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| T |
3392654 |
attcaaaatacaatgtagagaaattcttacggtatggtc |
3392692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 108
Target Start/End: Complemental strand, 3314051 - 3313976
Alignment:
| Q |
32 |
actaacttcaccaaagacttgagttgttacatgaagccacatgaatggaaatttagattagatttttaaaatggaca |
108 |
Q |
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||||||||| ||||| | |||||||||||||||||| | |||| ||| || |||| |||| |||||||| ||||||| |
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| T |
3314051 |
actaacttctccaaaaa-ttgagttgttacatgaagacccatgtatgaaactttatattatatttttaacatggaca |
3313976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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