View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15039_high_17 (Length: 270)

Name: NF15039_high_17
Description: NF15039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15039_high_17
NF15039_high_17
[»] chr5 (25 HSPs)
chr5 (39-107)||(5791991-5792058)
chr5 (1-39)||(43490538-43490576)
chr5 (1-38)||(48179-48216)
chr5 (1-38)||(2908637-2908674)
chr5 (1-38)||(2908844-2908881)
chr5 (1-38)||(11632423-11632460)
chr5 (1-38)||(28156028-28156065)
chr5 (1-38)||(28358110-28358147)
chr5 (41-98)||(29445308-29445365)
chr5 (1-38)||(34457295-34457332)
chr5 (39-75)||(10476391-10476427)
chr5 (5-40)||(15286843-15286878)
chr5 (5-36)||(30330643-30330674)
chr5 (5-36)||(32501205-32501236)
chr5 (4-38)||(17130062-17130096)
chr5 (5-38)||(13413782-13413815)
chr5 (5-38)||(18107557-18107590)
chr5 (1-38)||(18914236-18914273)
chr5 (1-38)||(18914443-18914480)
chr5 (5-38)||(38376723-38376756)
chr5 (5-38)||(39268010-39268043)
chr5 (5-38)||(39268218-39268251)
chr5 (5-38)||(43490335-43490368)
chr5 (52-136)||(5131087-5131176)
chr5 (6-38)||(35527355-35527387)
[»] chr1 (12 HSPs)
chr1 (39-98)||(5993792-5993851)
chr1 (1-38)||(12314570-12314607)
chr1 (1-41)||(9380889-9380929)
chr1 (1-39)||(29273300-29273338)
chr1 (40-81)||(28924941-28924982)
chr1 (44-107)||(28116056-28116119)
chr1 (40-95)||(45376621-45376676)
chr1 (5-40)||(52846928-52846963)
chr1 (5-38)||(15392017-15392050)
chr1 (5-38)||(39649163-39649196)
chr1 (5-38)||(52921546-52921579)
chr1 (5-41)||(48558400-48558436)
[»] chr7 (14 HSPs)
chr7 (39-104)||(23777266-23777331)
chr7 (1-38)||(6214310-6214347)
chr7 (39-104)||(10596240-10596305)
chr7 (1-38)||(39808672-39808709)
chr7 (5-39)||(16564885-16564919)
chr7 (5-39)||(16600743-16600777)
chr7 (49-99)||(19367295-19367345)
chr7 (5-39)||(35866718-35866752)
chr7 (5-38)||(2179646-2179679)
chr7 (5-38)||(6751788-6751821)
chr7 (5-38)||(16565090-16565123)
chr7 (5-38)||(16600539-16600572)
chr7 (5-38)||(23396601-23396634)
chr7 (5-38)||(33855683-33855716)
[»] chr3 (22 HSPs)
chr3 (39-104)||(55216639-55216704)
chr3 (1-39)||(22339732-22339770)
chr3 (1-39)||(22407723-22407761)
chr3 (1-38)||(9264368-9264405)
chr3 (1-38)||(54591540-54591577)
chr3 (1-39)||(48308532-48308570)
chr3 (1-38)||(4191197-4191234)
chr3 (1-38)||(39956542-39956579)
chr3 (5-38)||(42258902-42258935)
chr3 (1-38)||(50692315-50692352)
chr3 (1-38)||(50692518-50692555)
chr3 (5-38)||(54495523-54495556)
chr3 (2-38)||(22407517-22407553)
chr3 (1-39)||(39078846-39078884)
chr3 (1-38)||(5440569-5440606)
chr3 (5-38)||(9264165-9264198)
chr3 (5-38)||(9264579-9264612)
chr3 (5-38)||(25628000-25628033)
chr3 (5-38)||(29369793-29369826)
chr3 (5-38)||(35015477-35015510)
chr3 (1-38)||(37058846-37058883)
chr3 (5-38)||(53640044-53640077)
[»] chr4 (23 HSPs)
chr4 (49-107)||(43364078-43364136)
chr4 (1-38)||(12016758-12016795)
chr4 (1-38)||(12016966-12017003)
chr4 (1-38)||(21498523-21498560)
chr4 (1-38)||(25753680-25753717)
chr4 (1-38)||(54210369-54210406)
chr4 (5-41)||(33629593-33629629)
chr4 (49-107)||(3257608-3257666)
chr4 (5-38)||(8560050-8560083)
chr4 (5-38)||(17077019-17077052)
chr4 (5-38)||(17077223-17077256)
chr4 (39-104)||(19677768-19677833)
chr4 (5-38)||(28245783-28245816)
chr4 (5-38)||(28245985-28246018)
chr4 (5-38)||(28497293-28497326)
chr4 (5-38)||(33629855-33629888)
chr4 (40-81)||(43364201-43364242)
chr4 (5-38)||(43943665-43943698)
chr4 (5-38)||(49380959-49380992)
chr4 (5-38)||(53559384-53559417)
chr4 (7-39)||(5488358-5488390)
chr4 (44-104)||(19747377-19747436)
chr4 (44-104)||(19792370-19792429)
[»] chr6 (11 HSPs)
chr6 (1-38)||(15101186-15101223)
chr6 (1-41)||(16877085-16877125)
chr6 (39-98)||(12852083-12852142)
chr6 (1-38)||(16590176-16590213)
chr6 (1-38)||(16605167-16605204)
chr6 (5-39)||(25998808-25998842)
chr6 (5-39)||(26098333-26098367)
chr6 (5-38)||(6623504-6623537)
chr6 (5-38)||(11317040-11317073)
chr6 (39-104)||(20116242-20116307)
chr6 (5-38)||(24558575-24558608)
[»] chr8 (14 HSPs)
chr8 (43-99)||(30595599-30595655)
chr8 (5-39)||(5720946-5720980)
chr8 (5-38)||(18313776-18313809)
chr8 (1-38)||(20760735-20760772)
chr8 (1-37)||(42228764-42228800)
chr8 (55-98)||(18605408-18605451)
chr8 (1-39)||(40902468-40902506)
chr8 (5-38)||(8559573-8559606)
chr8 (5-38)||(8559757-8559790)
chr8 (5-38)||(8559877-8559910)
chr8 (1-38)||(10989316-10989353)
chr8 (1-38)||(15011104-15011141)
chr8 (5-38)||(33435875-33435908)
chr8 (5-38)||(43599510-43599543)
[»] chr2 (16 HSPs)
chr2 (5-39)||(6986495-6986529)
chr2 (1-38)||(16006969-16007006)
chr2 (1-38)||(19859917-19859954)
chr2 (1-38)||(19860029-19860066)
chr2 (1-38)||(20999064-20999101)
chr2 (1-38)||(34775349-34775386)
chr2 (39-98)||(31099032-31099091)
chr2 (44-98)||(36330320-36330374)
chr2 (5-38)||(883680-883713)
chr2 (5-38)||(884049-884082)
chr2 (5-38)||(10485170-10485203)
chr2 (5-38)||(12419830-12419863)
chr2 (5-38)||(12431890-12431923)
chr2 (5-38)||(12432097-12432130)
chr2 (5-38)||(17727396-17727429)
chr2 (5-38)||(40009966-40009999)
[»] scaffold0989 (1 HSPs)
scaffold0989 (1-37)||(3022-3058)
[»] scaffold0434 (1 HSPs)
scaffold0434 (1-38)||(13505-13542)
[»] scaffold0060 (1 HSPs)
scaffold0060 (5-37)||(59518-59550)


Alignment Details
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 5791991 - 5792058
Alignment:
Q  39 gtttcgaatggaactgaactgttttgaaccgaactgagctgtttcagttgagtttcagaaccgttaata 107  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||| || ||||||||||| |||||||    
T  5791991 gtttcgaatcgaactgaactgttttgaaccgaactgaactgtttca-ttcagtttcagaactgttaata 5792058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 43490538 - 43490576
Alignment:
Q  1 cttgtctatccgatgtgggacttggatttttcccaatag 39  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  43490538 cttgtctatccgatgtgggacttgggtttttcccaatag 43490576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 48179 - 48216
Alignment:
Q  1 cttgtctatccgatgtgggacttggatttttcccaata 38  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  48179 cttgtctatccgatgtgggacttgggtttttcccaata 48216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 2908637 - 2908674
Alignment:
Q  1 cttgtctatccgatgtgggacttggatttttcccaata 38  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  2908637 cttgtctatccgatgtgggacttgggtttttcccaata 2908674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 2908844 - 2908881
Alignment:
Q  1 cttgtctatccgatgtgggacttggatttttcccaata 38  Q
    |||||||||| |||||||||||||||||||||||||||    
T  2908844 cttgtctatctgatgtgggacttggatttttcccaata 2908881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 11632460 - 11632423
Alignment:
Q  1 cttgtctatccgatgtgggacttggatttttcccaata 38  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  11632460 cttgtctatccgatgtgggacttggattttttccaata 11632423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 28156065 - 28156028
Alignment:
Q  1 cttgtctatccgatgtgggacttggatttttcccaata 38  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  28156065 cttgtctatccgatgtgggacttgggtttttcccaata 28156028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 28358110 - 28358147
Alignment:
Q  1 cttgtctatccgatgtgggacttggatttttcccaata 38  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  28358110 cttgtctatccgatgtgggacttgggtttttcccaata 28358147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 41 - 98
Target Start/End: Original strand, 29445308 - 29445365
Alignment:
Q  41 ttcgaatggaactgaactgttttgaaccgaactgagctgtttcagttgagtttcagaa 98  Q
    ||||||| ||||||||||||||||||| ||||  | ||||||||||| ||||||||||    
T  29445308 ttcgaatcgaactgaactgttttgaactgaacctaactgtttcagttcagtttcagaa 29445365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 34457332 - 34457295
Alignment:
Q  1 cttgtctatccgatgtgggacttggatttttcccaata 38  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  34457332 cttgtctatccgatgtgggacttgggtttttcccaata 34457295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 10476427 - 10476391
Alignment:
Q  39 gtttcgaatggaactgaactgttttgaaccgaactga 75  Q
    ||||||||| |||||||||||||||||||||||||||    
T  10476427 gtttcgaatcgaactgaactgttttgaaccgaactga 10476391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 40
Target Start/End: Complemental strand, 15286878 - 15286843
Alignment:
Q  5 tctatccgatgtgggacttggatttttcccaatagt 40  Q
    ||||||||||||| ||||||||||||||||||||||    
T  15286878 tctatccgatgtgagacttggatttttcccaatagt 15286843  T

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Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 30330674 - 30330643
Alignment:
Q  5 tctatccgatgtgggacttggatttttcccaa 36  Q
    ||||||||||||||||||||||||||||||||    
T  30330674 tctatccgatgtgggacttggatttttcccaa 30330643  T

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Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 32501236 - 32501205
Alignment:
Q  5 tctatccgatgtgggacttggatttttcccaa 36  Q
    ||||||||||||||||||||||||||||||||    
T  32501236 tctatccgatgtgggacttggatttttcccaa 32501205  T

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Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 38
Target Start/End: Original strand, 17130062 - 17130096
Alignment:
Q  4 gtctatccgatgtgggacttggatttttcccaata 38  Q
    |||||||||||||||||||||| ||||||||||||    
T  17130062 gtctatccgatgtgggacttgggtttttcccaata 17130096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 13413815 - 13413782
Alignment:
Q  5 tctatccgatgtgggacttggatttttcccaata 38  Q
    ||||||||||||||||||||| ||||||||||||    
T  13413815 tctatccgatgtgggacttgggtttttcccaata 13413782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 18107557 - 18107590
Alignment:
Q  5 tctatccgatgtgggacttggatttttcccaata 38  Q
    ||||||||||||||||||||| ||||||||||||    
T  18107557 tctatccgatgtgggacttgggtttttcccaata 18107590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 18914236 - 18914273
Alignment:
Q  1 cttgtctatccgatgtgggacttggatttttcccaata 38  Q
    |||| |||||||||||||||||||| ||||||||||||    
T  18914236 cttgactatccgatgtgggacttgggtttttcccaata 18914273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 18914443 - 18914480
Alignment:
Q  1 cttgtctatccgatgtgggacttggatttttcccaata 38  Q
    |||| |||||||||||||||||||| ||||||||||||    
T  18914443 cttgactatccgatgtgggacttgggtttttcccaata 18914480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 38376756 - 38376723
Alignment:
Q  5 tctatccgatgtgggacttggatttttcccaata 38  Q
    ||||||||||||||||||||| ||||||||||||    
T  38376756 tctatccgatgtgggacttgggtttttcccaata 38376723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 39268043 - 39268010
Alignment:
Q  5 tctatccgatgtgggacttggatttttcccaata 38  Q
    ||||||||||||||||||||| ||||||||||||    
T  39268043 tctatccgatgtgggacttgggtttttcccaata 39268010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 39268251 - 39268218
Alignment:
Q  5 tctatccgatgtgggacttggatttttcccaata 38  Q
    ||||||||||||||||||||| ||||||||||||    
T  39268251 tctatccgatgtgggacttgggtttttcccaata 39268218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 43490335 - 43490368
Alignment:
Q  5 tctatccgatgtgggacttggatttttcccaata 38  Q
    ||||||||||||||||||||| ||||||||||||    
T  43490335 tctatccgatgtgggacttgggtttttcccaata 43490368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 136
Target Start/End: Complemental strand, 5131176 - 5131087
Alignment:
Q  52 ctgaactgttttgaaccgaactgagctgtttcagttgagtttcagaaccgt---taatagttcaa--atttgtttttgttcagttcagca 136  Q
    ||||||||||| ||| | |||||| ||||||||||| |||||||||||  |   |||||||||||   ||| ||||||||||||||||||    
T  5131176 ctgaactgtttcgaatcaaactgaactgtttcagttcagtttcagaactattagtaatagttcaattttttttttttgttcagttcagca 5131087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 35527355 - 35527387
Alignment:
Q  6 ctatccgatgtgggacttggatttttcccaata 38  Q
    |||||||||||||||||||| ||||||||||||    
T  35527355 ctatccgatgtgggacttgggtttttcccaata 35527387  T

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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 5993792 - 5993851
Alignment:
Q  39 gtttcgaatggaactgaactgttttgaaccgaactgagctgtttcagttgagtttcagaa 98  Q
    ||||||||| ||| ||||||||||||||||||||||| ||||||||||| ||||||||||    
T  5993792 gtttcgaatcgaattgaactgttttgaaccgaactgaactgtttcagttcagtttcagaa 5993851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 12314607 - 12314570
Alignment:
Q  1 cttgtctatccgatgtgggacttggatttttcccaata 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  12314607 cttgtctatccgatgtgggacttggatttttcccaata 12314570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 9380929 - 9380889
Alignment:
Q  1 cttgtctatccgatgtgggacttggatttttcccaatagtt 41  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  9380929 cttgtctatccgatgtgggacttgggtttttcccaatagtt 9380889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 29273300 - 29273338
Alignment:
Q  1 cttgtctatccgatgtgggacttggatttttcccaatag 39  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  29273300 cttgtctatccgatgtgggacttgggtttttcccaatag 29273338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 28924982 - 28924941
Alignment:
Q  40 tttcgaatggaactgaactgttttgaaccgaactgagctgtt 81  Q
    |||||||||| ||||||||||||||||||||||||| |||||    
T  28924982 tttcgaatgggactgaactgttttgaaccgaactgaactgtt 28924941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 44 - 107
Target Start/End: Original strand, 28116056 - 28116119
Alignment:
Q  44 gaatggaactgaactgttttgaaccgaactgagctgtttcagttgagtttcagaaccgttaata 107  Q
    |||| |||||||||||||||||||||||| || |||||| |||| ||||| ||||  |||||||    
T  28116056 gaatcgaactgaactgttttgaaccgaaccgaactgttttagttcagttttagaattgttaata 28116119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 95
Target Start/End: Original strand, 45376621 - 45376676
Alignment:
Q  40 tttcgaatggaactgaactgttttgaaccgaactgagctgtttcagttgagtttca 95  Q
    ||||||||  |||||||||||||||||| ||||||| |||| |||||| |||||||    
T  45376621 tttcgaatcaaactgaactgttttgaactgaactgaactgtatcagttcagtttca 45376676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 40
Target Start/End: Original strand, 52846928 - 52846963
Alignment:
Q  5 tctatccgatgtgggacttggatttttcccaatagt 40  Q
    ||||||||||||||||||||| ||||||||||||||    
T  52846928 tctatccgatgtgggacttgggtttttcccaatagt 52846963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 15392050 - 15392017
Alignment:
Q  5 tctatccgatgtgggacttggatttttcccaata 38  Q
    ||||||||||||||||||||| ||||||||||||    
T  15392050 tctatccgatgtgggacttgggtttttcccaata 15392017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 39649163 - 39649196
Alignment:
Q  5 tctatccgatgtgggacttggatttttcccaata 38  Q
    ||||||||||||||||||||| ||||||||||||    
T  39649163 tctatccgatgtgggacttgggtttttcccaata 39649196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 52921546 - 52921579
Alignment:
Q  5 tctatccgatgtgggacttggatttttcccaata 38  Q
    ||||||||||||||||||||| ||||||||||||    
T  52921546 tctatccgatgtgggacttgggtttttcccaata 52921579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 48558400 - 48558436
Alignment:
Q  5 tctatccgatgtgggacttggatttttcccaatagtt 41  Q
    |||||||||| |||||||||| |||||||||||||||    
T  48558400 tctatccgatatgggacttgggtttttcccaatagtt 48558436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 39 - 104
Target Start/End: Original strand, 23777266 - 23777331
Alignment:
Q  39 gtttcgaatggaactgaactgttttgaaccgaactgagctgtttcagttgagtttcagaaccgtta 104  Q
    ||||||||| ||||||||||||||||||  ||||||| ||||||||||| ||||||||||| ||||    
T  23777266 gtttcgaatcgaactgaactgttttgaaaagaactgaactgtttcagttcagtttcagaactgtta 23777331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 6214310 - 6214347
Alignment:
Q  1 cttgtctatccgatgtgggacttggatttttcccaata 38  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  6214310 cttgtctatccgatgtgggacttgggtttttcccaata 6214347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 104
Target Start/End: Original strand, 10596240 - 10596305
Alignment:
Q  39 gtttcgaatggaactgaactgttttgaaccgaactgagctgtttcagttgagtttcagaaccgtta 104  Q
    |||| |||| ||| |||||||||||||||  |||||| ||||||||||| ||||||||||| ||||    
T  10596240 gttttgaatcgaattgaactgttttgaactaaactgaactgtttcagttaagtttcagaactgtta 10596305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 39808672 - 39808709
Alignment:
Q  1 cttgtctatccgatgtgggacttggatttttcccaata 38  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  39808672 cttgtctatccgatgtgggacttgggtttttcccaata 39808709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 39
Target Start/End: Complemental strand, 16564919 - 16564885
Alignment:
Q  5 tctatccgatgtgggacttggatttttcccaatag 39  Q
    ||||||||||||||||||||| |||||||||||||    
T  16564919 tctatccgatgtgggacttgggtttttcccaatag 16564885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 39
Target Start/End: Original strand, 16600743 - 16600777
Alignment:
Q  5 tctatccgatgtgggacttggatttttcccaatag 39  Q
    ||||||||||||||||||||| |||||||||||||    
T  16600743 tctatccgatgtgggacttgggtttttcccaatag 16600777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 99
Target Start/End: Original strand, 19367295 - 19367345
Alignment:
Q  49 gaactgaactgttttgaaccgaactgagctgtttcagttgagtttcagaac 99  Q
    ||||||||||||||| ||| ||||||| |||||| |||| |||||||||||    
T  19367295 gaactgaactgttttcaactgaactgaactgtttaagttcagtttcagaac 19367345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 39
Target Start/End: Original strand, 35866718 - 35866752
Alignment:
Q  5 tctatccgatgtgggacttggatttttcccaatag 39  Q
    ||||||||||||||||||||| |||||||||||||    
T  35866718 tctatccgatgtgggacttgggtttttcccaatag 35866752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 2179679 - 2179646
Alignment:
Q  5 tctatccgatgtgggacttggatttttcccaata 38  Q
    |||||||||||||||||||| |||||||||||||    
T  2179679 tctatccgatgtgggacttgaatttttcccaata 2179646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 6751788 - 6751821
Alignment:
Q  5 tctatccgatgtgggacttggatttttcccaata 38  Q
    ||||||||||||||||||||| ||||||||||||    
T  6751788 tctatccgatgtgggacttgggtttttcccaata 6751821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 16565123 - 16565090
Alignment:
Q  5 tctatccgatgtgggacttggatttttcccaata 38  Q
    ||||||||||||||||||||| ||||||||||||    
T  16565123 tctatccgatgtgggacttgggtttttcccaata 16565090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 16600539 - 16600572
Alignment:
Q  5 tctatccgatgtgggacttggatttttcccaata 38  Q
    ||||||||||||||||||||| ||||||||||||    
T  16600539 tctatccgatgtgggacttgggtttttcccaata 16600572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 23396634 - 23396601
Alignment:
Q  5 tctatccgatgtgggacttggatttttcccaata 38  Q
    |||||||| |||||||||||||||||||||||||    
T  23396634 tctatccgttgtgggacttggatttttcccaata 23396601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 33855716 - 33855683
Alignment:
Q  5 tctatccgatgtgggacttggatttttcccaata 38  Q
    ||||||||||||||||||||| ||||||||||||    
T  33855716 tctatccgatgtgggacttgggtttttcccaata 33855683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 39 - 104
Target Start/End: Complemental strand, 55216704 - 55216639
Alignment:
Q  39 gtttcgaatggaactgaactgttttgaaccgaactgagctgtttcagttgagtttcagaaccgtta 104  Q
    ||||||||| |||||||||| |||||||| ||||||| ||||||||||| ||||||||||| ||||    
T  55216704 gtttcgaatcgaactgaactattttgaactgaactgaactgtttcagttcagtttcagaactgtta 55216639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 22339770 - 22339732
Alignment:
Q  1 cttgtctatccgatgtgggacttggatttttcccaatag 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  22339770 cttgtctatccgatgtgggacttggatttttcccaatag 22339732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 22407723 - 22407761
Alignment:
Q  1 cttgtctatccgatgtgggacttggatttttcccaatag 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  22407723 cttgtctatccgatgtgggacttggatttttcccaatag 22407761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 9264368 - 9264405
Alignment:
Q  1 cttgtctatccgatgtgggacttggatttttcccaata 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9264368 cttgtctatccgatgtgggacttggatttttcccaata 9264405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 54591540 - 54591577
Alignment:
Q  1 cttgtctatccgatgtgggacttggatttttcccaata 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  54591540 cttgtctatccgatgtgggacttggatttttcccaata 54591577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 48308532 - 48308570
Alignment:
Q  1 cttgtctatccgatgtgggacttggatttttcccaatag 39  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  48308532 cttgtctattcgatgtgggacttggatttttcccaatag 48308570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 4191197 - 4191234
Alignment:
Q  1 cttgtctatccgatgtgggacttggatttttcccaata 38  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  4191197 cttgtctatccgatgtgggacttgggtttttcccaata 4191234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 39956542 - 39956579
Alignment:
Q  1 cttgtctatccgatgtgggacttggatttttcccaata 38  Q
    |||||||||| |||||||||||||||||||||||||||    
T  39956542 cttgtctatctgatgtgggacttggatttttcccaata 39956579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 42258935 - 42258902
Alignment:
Q  5 tctatccgatgtgggacttggatttttcccaata 38  Q
    ||||||||||||||||||||||||||||||||||    
T  42258935 tctatccgatgtgggacttggatttttcccaata 42258902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 50692352 - 50692315
Alignment:
Q  1 cttgtctatccgatgtgggacttggatttttcccaata 38  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  50692352 cttgtctatccgatgtgggacttgggtttttcccaata 50692315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 50692555 - 50692518
Alignment:
Q  1 cttgtctatccgatgtgggacttggatttttcccaata 38  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  50692555 cttgtctatccgatgtgggacttgggtttttcccaata 50692518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 54495556 - 54495523
Alignment:
Q  5 tctatccgatgtgggacttggatttttcccaata 38  Q
    ||||||||||||||||||||||||||||||||||    
T  54495556 tctatccgatgtgggacttggatttttcccaata 54495523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 22407517 - 22407553
Alignment:
Q  2 ttgtctatccgatgtgggacttggatttttcccaata 38  Q
    |||||||||||||||||||||| ||||||||||||||    
T  22407517 ttgtctatccgatgtgggacttagatttttcccaata 22407553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 39078846 - 39078884
Alignment:
Q  1 cttgtctatccgatgtgggacttggatttttcccaatag 39  Q
    |||||||||||||| |||||||||| |||||||||||||    
T  39078846 cttgtctatccgatatgggacttgggtttttcccaatag 39078884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 5440606 - 5440569
Alignment:
Q  1 cttgtctatccgatgtgggacttggatttttcccaata 38  Q
    |||||||||||||||||| |||||| ||||||||||||    
T  5440606 cttgtctatccgatgtggaacttgggtttttcccaata 5440569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 9264165 - 9264198
Alignment:
Q  5 tctatccgatgtgggacttggatttttcccaata 38  Q
    ||||||||||||||||||||| ||||||||||||    
T  9264165 tctatccgatgtgggacttgggtttttcccaata 9264198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 9264579 - 9264612
Alignment:
Q  5 tctatccgatgtgggacttggatttttcccaata 38  Q
    ||||||||||||||||||||| ||||||||||||    
T  9264579 tctatccgatgtgggacttgggtttttcccaata 9264612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 25628000 - 25628033
Alignment:
Q  5 tctatccgatgtgggacttggatttttcccaata 38  Q
    ||||||||||||||||||||| ||||||||||||    
T  25628000 tctatccgatgtgggacttgggtttttcccaata 25628033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 29369826 - 29369793
Alignment:
Q  5 tctatccgatgtgggacttggatttttcccaata 38  Q
    ||||||||||||||||||||| ||||||||||||    
T  29369826 tctatccgatgtgggacttgggtttttcccaata 29369793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 35015510 - 35015477
Alignment:
Q  5 tctatccgatgtgggacttggatttttcccaata 38  Q
    ||||||||||||||||||||| ||||||||||||    
T  35015510 tctatccgatgtgggacttggctttttcccaata 35015477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 37058846 - 37058883
Alignment:
Q  1 cttgtctatccgatgtgggacttggatttttcccaata 38  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  37058846 cttgtctatctgatgtgggacttgggtttttcccaata 37058883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 53640044 - 53640077
Alignment:
Q  5 tctatccgatgtgggacttggatttttcccaata 38  Q
    |||||||||| |||||||||||||||||||||||    
T  53640044 tctatccgatatgggacttggatttttcccaata 53640077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 49 - 107
Target Start/End: Complemental strand, 43364136 - 43364078
Alignment:
Q  49 gaactgaactgttttgaaccgaactgagctgtttcagttgagtttcagaaccgttaata 107  Q
    |||||||||||||||||| |||||||| |||||||| || ||||| |||||||||||||    
T  43364136 gaactgaactgttttgaatcgaactgaactgtttcaattcagttttagaaccgttaata 43364078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 12016758 - 12016795
Alignment:
Q  1 cttgtctatccgatgtgggacttggatttttcccaata 38  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  12016758 cttgtctatccgatgtgggacttgggtttttcccaata 12016795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 12016966 - 12017003
Alignment:
Q  1 cttgtctatccgatgtgggacttggatttttcccaata 38  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  12016966 cttgtctatccgatgtgggacttgggtttttcccaata 12017003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 21498560 - 21498523
Alignment:
Q  1 cttgtctatccgatgtgggacttggatttttcccaata 38  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  21498560 cttgtctatccgatgtgggacttgggtttttcccaata 21498523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 25753680 - 25753717
Alignment:
Q  1 cttgtctatccgatgtgggacttggatttttcccaata 38  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  25753680 cttgtctatccgatgtgggacttgggtttttcccaata 25753717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 54210406 - 54210369
Alignment:
Q  1 cttgtctatccgatgtgggacttggatttttcccaata 38  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  54210406 cttgtctatccgatgtgggacttgggtttttcccaata 54210369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 33629629 - 33629593
Alignment:
Q  5 tctatccgatgtgggacttggatttttcccaatagtt 41  Q
    ||||||||||||||||||||| |||||||||||||||    
T  33629629 tctatccgatgtgggacttgggtttttcccaatagtt 33629593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 107
Target Start/End: Complemental strand, 3257666 - 3257608
Alignment:
Q  49 gaactgaactgttttgaaccgaactgagctgtttcagttgagtttcagaaccgttaata 107  Q
    ||||||||||||||||||  |||| || ||||||||||| ||||||| ||| |||||||    
T  3257666 gaactgaactgttttgaaatgaaccgaactgtttcagttcagtttcaaaactgttaata 3257608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 8560050 - 8560083
Alignment:
Q  5 tctatccgatgtgggacttggatttttcccaata 38  Q
    |||||||||||||||||||||| |||||||||||    
T  8560050 tctatccgatgtgggacttggacttttcccaata 8560083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 17077019 - 17077052
Alignment:
Q  5 tctatccgatgtgggacttggatttttcccaata 38  Q
    ||||||||||||||||||||| ||||||||||||    
T  17077019 tctatccgatgtgggacttgggtttttcccaata 17077052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 17077223 - 17077256
Alignment:
Q  5 tctatccgatgtgggacttggatttttcccaata 38  Q
    ||||||||||||||||||||| ||||||||||||    
T  17077223 tctatccgatgtgggacttgggtttttcccaata 17077256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 104
Target Start/End: Complemental strand, 19677833 - 19677768
Alignment:
Q  39 gtttcgaatggaactgaactgttttgaaccgaactgagctgtttcagttgagtttcagaaccgtta 104  Q
    |||| |||| ||||| ||||||||||||||||| ||| || |||||||| ||||||| ||| ||||    
T  19677833 gttttgaatcgaactaaactgttttgaaccgaattgaactatttcagttcagtttcaaaactgtta 19677768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 28245816 - 28245783
Alignment:
Q  5 tctatccgatgtgggacttggatttttcccaata 38  Q
    ||||||||||||||||||||| ||||||||||||    
T  28245816 tctatccgatgtgggacttgggtttttcccaata 28245783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 28246018 - 28245985
Alignment:
Q  5 tctatccgatgtgggacttggatttttcccaata 38  Q
    ||||||||||||||||||||| ||||||||||||    
T  28246018 tctatccgatgtgggacttgggtttttcccaata 28245985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 28497293 - 28497326
Alignment:
Q  5 tctatccgatgtgggacttggatttttcccaata 38  Q
    ||||||||||||||||||||| ||||||||||||    
T  28497293 tctatccgatgtgggacttgggtttttcccaata 28497326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 33629888 - 33629855
Alignment:
Q  5 tctatccgatgtgggacttggatttttcccaata 38  Q
    ||||||||||||||||||||| ||||||||||||    
T  33629888 tctatccgatgtgggacttgggtttttcccaata 33629855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 43364242 - 43364201
Alignment:
Q  40 tttcgaatggaactgaactgttttgaaccgaactgagctgtt 81  Q
    |||||||| ||||||||||||||| ||||||||||| |||||    
T  43364242 tttcgaatcgaactgaactgttttaaaccgaactgaactgtt 43364201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 43943698 - 43943665
Alignment:
Q  5 tctatccgatgtgggacttggatttttcccaata 38  Q
    ||||||||||||||||||||| ||||||||||||    
T  43943698 tctatccgatgtgggacttgggtttttcccaata 43943665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 49380959 - 49380992
Alignment:
Q  5 tctatccgatgtgggacttggatttttcccaata 38  Q
    ||||||||||||| ||||||||||||||||||||    
T  49380959 tctatccgatgtgagacttggatttttcccaata 49380992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 53559384 - 53559417
Alignment:
Q  5 tctatccgatgtgggacttggatttttcccaata 38  Q
    ||||||||||||||||||||| ||||||||||||    
T  53559384 tctatccgatgtgggacttggttttttcccaata 53559417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 39
Target Start/End: Complemental strand, 5488390 - 5488358
Alignment:
Q  7 tatccgatgtgggacttggatttttcccaatag 39  Q
    ||||||||||||||||||| |||||||||||||    
T  5488390 tatccgatgtgggacttgggtttttcccaatag 5488358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 104
Target Start/End: Complemental strand, 19747436 - 19747377
Alignment:
Q  44 gaatggaactgaactgttttgaaccgaactgagctgtttcagttgagtttcagaaccgtta 104  Q
    |||| |||||||||||||| |||| ||||||| ||| ||||||| ||||||||||| ||||    
T  19747436 gaatagaactgaactgtttcgaacagaactgaactg-ttcagttcagtttcagaactgtta 19747377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 104
Target Start/End: Original strand, 19792370 - 19792429
Alignment:
Q  44 gaatggaactgaactgttttgaaccgaactgagctgtttcagttgagtttcagaaccgtta 104  Q
    |||| |||||||||||||| |||| ||||||| ||| ||||||| ||||||||||| ||||    
T  19792370 gaatagaactgaactgtttcgaacagaactgaactg-ttcagttcagtttcagaactgtta 19792429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 15101186 - 15101223
Alignment:
Q  1 cttgtctatccgatgtgggacttggatttttcccaata 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  15101186 cttgtctatccgatgtgggacttggatttttcccaata 15101223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 16877085 - 16877125
Alignment:
Q  1 cttgtctatccgatgtgggacttggatttttcccaatagtt 41  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  16877085 cttgtctatccgatgtgggacttgggtttttcccaatagtt 16877125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 12852142 - 12852083
Alignment:
Q  39 gtttcgaatggaactgaactgttttgaaccgaactgagctgtttcagttgagtttcagaa 98  Q
    ||||| ||| |||||||||| ||||||||||||| || ||||||||||| ||||||||||    
T  12852142 gtttcaaatcgaactgaactattttgaaccgaaccgaactgtttcagttcagtttcagaa 12852083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 16590213 - 16590176
Alignment:
Q  1 cttgtctatccgatgtgggacttggatttttcccaata 38  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  16590213 cttgtctatccgatgtgggacttgggtttttcccaata 16590176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 16605167 - 16605204
Alignment:
Q  1 cttgtctatccgatgtgggacttggatttttcccaata 38  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  16605167 cttgtctatccgatgtgggacttgggtttttcccaata 16605204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 39
Target Start/End: Complemental strand, 25998842 - 25998808
Alignment:
Q  5 tctatccgatgtgggacttggatttttcccaatag 39  Q
    ||||||||||||||||||||| |||||||||||||    
T  25998842 tctatccgatgtgggacttgggtttttcccaatag 25998808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 39
Target Start/End: Complemental strand, 26098367 - 26098333
Alignment:
Q  5 tctatccgatgtgggacttggatttttcccaatag 39  Q
    ||||||||||||||||||||| |||||||||||||    
T  26098367 tctatccgatgtgggacttgggtttttcccaatag 26098333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 6623504 - 6623537
Alignment:
Q  5 tctatccgatgtgggacttggatttttcccaata 38  Q
    ||||||||||||||||||||| ||||||||||||    
T  6623504 tctatccgatgtgggacttgggtttttcccaata 6623537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 11317073 - 11317040
Alignment:
Q  5 tctatccgatgtgggacttggatttttcccaata 38  Q
    ||||||||||||||||||||| ||||||||||||    
T  11317073 tctatccgatgtgggacttgggtttttcccaata 11317040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 104
Target Start/End: Complemental strand, 20116307 - 20116242
Alignment:
Q  39 gtttcgaatggaactgaactgttttgaaccgaactgagctgtttcagttgagtttcagaaccgtta 104  Q
    |||||||||||||||||||| |||| || |||||||| |||||| |||| | ||||| ||| ||||    
T  20116307 gtttcgaatggaactgaacttttttaaaacgaactgaactgttttagttcaatttcaaaactgtta 20116242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 24558608 - 24558575
Alignment:
Q  5 tctatccgatgtgggacttggatttttcccaata 38  Q
    |||||| |||||||||||||||||||||||||||    
T  24558608 tctatctgatgtgggacttggatttttcccaata 24558575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 43 - 99
Target Start/End: Original strand, 30595599 - 30595655
Alignment:
Q  43 cgaatggaactgaactgttttgaaccgaactgagctgtttcagttgagtttcagaac 99  Q
    ||||| |||||||||||||||||| |||||||  ||||||||||| |||||||||||    
T  30595599 cgaattgaactgaactgttttgaatcgaactgtactgtttcagttcagtttcagaac 30595655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 39
Target Start/End: Original strand, 5720946 - 5720980
Alignment:
Q  5 tctatccgatgtgggacttggatttttcccaatag 39  Q
    |||||||||||||||||||||||||||||||||||    
T  5720946 tctatccgatgtgggacttggatttttcccaatag 5720980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 18313809 - 18313776
Alignment:
Q  5 tctatccgatgtgggacttggatttttcccaata 38  Q
    ||||||||||||||||||||||||||||||||||    
T  18313809 tctatccgatgtgggacttggatttttcccaata 18313776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 20760735 - 20760772
Alignment:
Q  1 cttgtctatccgatgtgggacttggatttttcccaata 38  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  20760735 cttgtctatccgatgtgggacttgggtttttcccaata 20760772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 42228800 - 42228764
Alignment:
Q  1 cttgtctatccgatgtgggacttggatttttcccaat 37  Q
    ||||||||||||||||||||||| |||||||||||||    
T  42228800 cttgtctatccgatgtgggacttagatttttcccaat 42228764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 55 - 98
Target Start/End: Original strand, 18605408 - 18605451
Alignment:
Q  55 aactgttttgaaccgaactgagctgtttcagttgagtttcagaa 98  Q
    |||||||||||||||||||||  |||||||||| ||||||||||    
T  18605408 aactgttttgaaccgaactgaattgtttcagttcagtttcagaa 18605451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 40902468 - 40902506
Alignment:
Q  1 cttgtctatccgatgtgggacttggatttttcccaatag 39  Q
    |||||||||||||||||| |||||| |||||||||||||    
T  40902468 cttgtctatccgatgtggaacttgggtttttcccaatag 40902506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 8559606 - 8559573
Alignment:
Q  5 tctatccgatgtgggacttggatttttcccaata 38  Q
    ||||||||||||||||||||| ||||||||||||    
T  8559606 tctatccgatgtgggacttgggtttttcccaata 8559573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 8559757 - 8559790
Alignment:
Q  5 tctatccgatgtgggacttggatttttcccaata 38  Q
    ||||||||||||||||||||| ||||||||||||    
T  8559757 tctatccgatgtgggacttgggtttttcccaata 8559790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 8559877 - 8559910
Alignment:
Q  5 tctatccgatgtgggacttggatttttcccaata 38  Q
    ||||||||||||||||||||| ||||||||||||    
T  8559877 tctatccgatgtgggacttgggtttttcccaata 8559910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 10989316 - 10989353
Alignment:
Q  1 cttgtctatccgatgtgggacttggatttttcccaata 38  Q
    ||||||||||||||||||||||||| ||||| ||||||    
T  10989316 cttgtctatccgatgtgggacttgggttttttccaata 10989353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 15011104 - 15011141
Alignment:
Q  1 cttgtctatccgatgtgggacttggatttttcccaata 38  Q
    ||||||||||||||||||||||||| ||||| ||||||    
T  15011104 cttgtctatccgatgtgggacttgggttttttccaata 15011141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 33435908 - 33435875
Alignment:
Q  5 tctatccgatgtgggacttggatttttcccaata 38  Q
    ||||||||||||||||||||| ||||||||||||    
T  33435908 tctatccgatgtgggacttgggtttttcccaata 33435875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 43599543 - 43599510
Alignment:
Q  5 tctatccgatgtgggacttggatttttcccaata 38  Q
    ||||||||||||||||||||| ||||||||||||    
T  43599543 tctatccgatgtgggacttgggtttttcccaata 43599510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 39
Target Start/End: Original strand, 6986495 - 6986529
Alignment:
Q  5 tctatccgatgtgggacttggatttttcccaatag 39  Q
    |||||||||||||||||||||||||||||||||||    
T  6986495 tctatccgatgtgggacttggatttttcccaatag 6986529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 16007006 - 16006969
Alignment:
Q  1 cttgtctatccgatgtgggacttggatttttcccaata 38  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  16007006 cttgtctatccgatgtgggacttgggtttttcccaata 16006969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 19859954 - 19859917
Alignment:
Q  1 cttgtctatccgatgtgggacttggatttttcccaata 38  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  19859954 cttgtctatccgatgtgggacttgggtttttcccaata 19859917  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 19860066 - 19860029
Alignment:
Q  1 cttgtctatccgatgtgggacttggatttttcccaata 38  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  19860066 cttgtctatccgatgtgggacttgggtttttcccaata 19860029  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 20999064 - 20999101
Alignment:
Q  1 cttgtctatccgatgtgggacttggatttttcccaata 38  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  20999064 cttgtctatccgatgtgggacttgggtttttcccaata 20999101  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 34775386 - 34775349
Alignment:
Q  1 cttgtctatccgatgtgggacttggatttttcccaata 38  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  34775386 cttgtctatccgatgtgggacttgggtttttcccaata 34775349  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 31099032 - 31099091
Alignment:
Q  39 gtttcgaatggaactgaactgttttgaaccgaactgagctgtttcagttgagtttcagaa 98  Q
    ||||||||| |||| |||||||||||||| |||| || |||||| |||| ||||||||||    
T  31099032 gtttcgaattgaaccgaactgttttgaactgaaccgaactgttttagttcagtttcagaa 31099091  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 98
Target Start/End: Complemental strand, 36330374 - 36330320
Alignment:
Q  44 gaatggaactgaactgttttgaaccgaactgagctgtttcagttgagtttcagaa 98  Q
    |||| |||||||| ||||||||||||||| || ||||||| ||| ||||||||||    
T  36330374 gaatcgaactgaattgttttgaaccgaaccgaactgtttctgttcagtttcagaa 36330320  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 883680 - 883713
Alignment:
Q  5 tctatccgatgtgggacttggatttttcccaata 38  Q
    ||||||||||||||||||||| ||||||||||||    
T  883680 tctatccgatgtgggacttgggtttttcccaata 883713  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 884082 - 884049
Alignment:
Q  5 tctatccgatgtgggacttggatttttcccaata 38  Q
    ||||||||||||||||||||| ||||||||||||    
T  884082 tctatccgatgtgggacttgggtttttcccaata 884049  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 10485203 - 10485170
Alignment:
Q  5 tctatccgatgtgggacttggatttttcccaata 38  Q
    ||||||||||||||||| ||||||||||||||||    
T  10485203 tctatccgatgtgggacatggatttttcccaata 10485170  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 12419863 - 12419830
Alignment:
Q  5 tctatccgatgtgggacttggatttttcccaata 38  Q
    ||||||||||||||||||||| ||||||||||||    
T  12419863 tctatccgatgtgggacttgggtttttcccaata 12419830  T

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Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 12431923 - 12431890
Alignment:
Q  5 tctatccgatgtgggacttggatttttcccaata 38  Q
    ||||||||||||||||||||| ||||||||||||    
T  12431923 tctatccgatgtgggacttgggtttttcccaata 12431890  T

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Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 12432130 - 12432097
Alignment:
Q  5 tctatccgatgtgggacttggatttttcccaata 38  Q
    ||||||||||||||||||||||||||| ||||||    
T  12432130 tctatccgatgtgggacttggattttttccaata 12432097  T

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Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 17727429 - 17727396
Alignment:
Q  5 tctatccgatgtgggacttggatttttcccaata 38  Q
    ||||||||||||||||||||| ||||||||||||    
T  17727429 tctatccgatgtgggacttgggtttttcccaata 17727396  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 40009999 - 40009966
Alignment:
Q  5 tctatccgatgtgggacttggatttttcccaata 38  Q
    ||||||||||||||||||||| ||||||||||||    
T  40009999 tctatccgatgtgggacttgggtttttcccaata 40009966  T

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Target: scaffold0989 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0989
Description:

Target: scaffold0989; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 3022 - 3058
Alignment:
Q  1 cttgtctatccgatgtgggacttggatttttcccaat 37  Q
    ||||||||||||||||||||||||| |||||||||||    
T  3022 cttgtctatccgatgtgggacttgggtttttcccaat 3058  T

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Target: scaffold0434 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0434
Description:

Target: scaffold0434; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 13542 - 13505
Alignment:
Q  1 cttgtctatccgatgtgggacttggatttttcccaata 38  Q
    |||||||||||||| |||||||||| ||||||||||||    
T  13542 cttgtctatccgatttgggacttgggtttttcccaata 13505  T

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Target: scaffold0060 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 59550 - 59518
Alignment:
Q  5 tctatccgatgtgggacttggatttttcccaat 37  Q
    ||||||||||||||||||||| |||||||||||    
T  59550 tctatccgatgtgggacttgggtttttcccaat 59518  T

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