View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15039_high_23 (Length: 228)
Name: NF15039_high_23
Description: NF15039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15039_high_23 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 13 - 109
Target Start/End: Complemental strand, 7370628 - 7370532
Alignment:
| Q |
13 |
gttatcatgtcatttacatgacccaacgtgaaaatatcataatgataccaaaatattacataaaattgctaaatataaaattggaatctttcaaata |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
7370628 |
gttatcatgtcatttacatgacccaacgtgaaaatatcataatgatactaaaatattacataaaattgctaaatataaaattagaatctttcaaata |
7370532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 113 - 211
Target Start/End: Complemental strand, 7370414 - 7370316
Alignment:
| Q |
113 |
ttcttacattttgtatccatatgtatatctctctccgcccaaatatcatcactgtcaaggacgactcatacccaaagacttaggtattcttcatccttt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
7370414 |
ttcttacattttgtatccatatgtatatatctctccgcccaaatatcatctctgtcaaggacgactcctacccaaagacttaggtattcttcatccttt |
7370316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 87; Significance: 7e-42; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 113 - 211
Target Start/End: Original strand, 53157899 - 53157997
Alignment:
| Q |
113 |
ttcttacattttgtatccatatgtatatctctctccgcccaaatatcatcactgtcaaggacgactcatacccaaagacttaggtattcttcatccttt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
53157899 |
ttcttacattttgtatccatatgtatatctctctccacccaaatatcatcattgtcaaggacgactcctacccaaagacttaggtattcttcatccttt |
53157997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 13 - 109
Target Start/End: Original strand, 53157684 - 53157780
Alignment:
| Q |
13 |
gttatcatgtcatttacatgacccaacgtgaaaatatcataatgataccaaaatattacataaaattgctaaatataaaattggaatctttcaaata |
109 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
53157684 |
gttatcatgtcatttacatgatccaacatgaaaatatcataatgataccaaaatattacataaaactgctaaatataaacttggaatctttcaaata |
53157780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University