View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15039_high_3 (Length: 474)
Name: NF15039_high_3
Description: NF15039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15039_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 220 - 460
Target Start/End: Complemental strand, 35458725 - 35458485
Alignment:
| Q |
220 |
gcttgttgtggaattacgtttccagattgaaactataaaactgaattctgatgaaatatttgcaaaattgatttgtaatcggtgatttttgtttctgaca |
319 |
Q |
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| T |
35458725 |
gcttgttgtggaattacgtttccagattgaaactataaaactgaattctgatgaaatatttgcaaaattgatttgtaatcggtgatttttgtttctgaca |
35458626 |
T |
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| Q |
320 |
gtgttgcctctgaaatcaagtctactatcgagggattgaggactaaatttgagaaggaaaggtagatttgacattagtttagattttatgcactaattaa |
419 |
Q |
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| T |
35458625 |
gtgttgcctctgaaatcaagtctactatcgagggattgaggactaaatttgagaaggaaaggtagatttcacatcagtttagattttatgcactaattaa |
35458526 |
T |
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| Q |
420 |
tgaattattttttgtttcactgtactgaaagagtgtattgt |
460 |
Q |
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| T |
35458525 |
tgaattagtttttgtttcactgtactgaaagagtgtattgt |
35458485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 35458944 - 35458807
Alignment:
| Q |
1 |
tcagaagaagaacgaagaaactatttcaaggtaccgcgtttgcgtttcgatttcactgtagttgaattttgaagattatacttgaaaaaatgattcgtat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
35458944 |
tcagaagaagaacgaagaaactatttcaaggtaccgcgtttgcgtttcgatttcactgtagttgaattttgaagattatacttgaaaaaattattcgtat |
35458845 |
T |
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| Q |
101 |
gtgtgagagaagcttccactaatctagatttttaaccg |
138 |
Q |
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| T |
35458844 |
gtgtgagagaagcttccactaatctagatttttaaccg |
35458807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 301 - 402
Target Start/End: Original strand, 11679102 - 11679203
Alignment:
| Q |
301 |
gtgatttttgtttctgacagtgttgcctctgaaatcaagtctactatcgagggattgaggactaaatttgagaaggaaaggtagatttgacattagttta |
400 |
Q |
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|||||| ||||||||||||||||||||||||| ||||||||||| | |||||||||||||| |||||||||||||||| ||||||| || || |||||| |
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| T |
11679102 |
gtgattattgtttctgacagtgttgcctctgagatcaagtctacgtttgagggattgaggaccaaatttgagaaggaaacgtagattcgaaatcagttta |
11679201 |
T |
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| Q |
401 |
ga |
402 |
Q |
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|| |
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| T |
11679202 |
ga |
11679203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 220 - 273
Target Start/End: Complemental strand, 40849272 - 40849219
Alignment:
| Q |
220 |
gcttgttgtggaattacgtttccagattgaaactataaaactgaattctgatga |
273 |
Q |
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||||||| |||||||| ||||||||| ||| | ||||||||||||||||||||| |
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| T |
40849272 |
gcttgttatggaattatgtttccagaatgagattataaaactgaattctgatga |
40849219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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