View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15039_high_4 (Length: 471)
Name: NF15039_high_4
Description: NF15039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15039_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 430; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 18 - 459
Target Start/End: Original strand, 52289558 - 52289999
Alignment:
| Q |
18 |
ccaatataccaatgcataccatacaagtctatatctcacacacacaagatatcaaaaggaaaagacaaacaaaattgctaaaattctttgtaatctacaa |
117 |
Q |
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| T |
52289558 |
ccaatataccaatgcataccatacaagtctatatctcacacacacaagatatcaaaaggaaaagacaaacaaaattgctaaaattctttgtaatctacaa |
52289657 |
T |
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| Q |
118 |
tttcacatccttagtttgaacacttgtttgaagatttgtaatcgacttaggattccaaacgaacatttgttgccaaatctccatgaaagctcgcacaatt |
217 |
Q |
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| T |
52289658 |
ttccacatccttagtttgaacacttgtttgaagatttgtaatcgacttaggattccaaacgaacatttgttgccaaatctccatgaaagctcgcacaatt |
52289757 |
T |
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| Q |
218 |
actccatgataatctctagaattcagagccaaaaaacactgcaatagttgctccaagtccttggcttcggacatttccatctcttctatcatctctaaca |
317 |
Q |
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| T |
52289758 |
actccatgataatctctagaattcagagccaaaaaacactgcaatagttgctccaagtccttggcttcagacatttccatctcttctatcatctctaaca |
52289857 |
T |
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| Q |
318 |
ttgatttcttgaagtcttcgtaaggatcctttgactttttcaccaaagcaaagctttcttttaccttctcctccattctacatgacataaccttcgtttc |
417 |
Q |
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| T |
52289858 |
ttgatttcttgaagtcttcgtaaggatcctttgactttttcaccaaagcaaagctttcttttaccttctcctccattctacttgacataaccttcgtttc |
52289957 |
T |
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| Q |
418 |
ggttcctcttcgattctcttccattctacttgacataacctt |
459 |
Q |
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| T |
52289958 |
ggttcctcttcgattctcttccattctacttgacataacctt |
52289999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 383 - 436
Target Start/End: Original strand, 52289971 - 52290024
Alignment:
| Q |
383 |
ttctcctccattctacatgacataaccttcgtttcggttcctcttcgattctct |
436 |
Q |
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| T |
52289971 |
ttctcttccattctacttgacataaccttcgtttcttttcctctttgattctct |
52290024 |
T |
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