View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15039_high_7 (Length: 428)
Name: NF15039_high_7
Description: NF15039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15039_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 7 - 416
Target Start/End: Original strand, 10460361 - 10460770
Alignment:
| Q |
7 |
gatatgaagccaacaactggaaaaccatacaagttgcggagaccagaaggcctagatgttcagaagggaagtgttttatctaaggtgcctctattgcatc |
106 |
Q |
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| T |
10460361 |
gatatggagccaacaactggaaaaccatacaagttgcggagaccagaaggcctagatgttcagaagggaagtgttttatctaaggtgcctctattgcatc |
10460460 |
T |
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| Q |
107 |
tgcactgcagagaactggcactccccaacattgctaagtttcttcatgttttaggaaagagttcagaagaacttcccccttcacttagcctgcagcctga |
206 |
Q |
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| T |
10460461 |
taaactgcagagaactggtactccccaacattgctaagtttcttcatgttttaggaaagagttcagaagaacttcacccttcacttagcctgcagcctga |
10460560 |
T |
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| Q |
207 |
tattcttcgctttgtcgcaacaatgcctaatcatatgagaattagttggaatcttatgtcatcatatttagtttgagaaaaactattaacttgtggagaa |
306 |
Q |
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| T |
10460561 |
tattcttcgctttgtcgcaacaatgcctaatcatatgagaattagttggaatcttatgtcatcatatttagtttgagaaaaactaccaacttgtggagaa |
10460660 |
T |
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| Q |
307 |
agacatatatgtcaactaatattattaagatgatggcagtaatataaatggaaggaaatcattgcaatgtgatgtgatgaaataatctgaacaaaattaa |
406 |
Q |
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| T |
10460661 |
agacatatatgtcaactaatattattaagatgatggcagtaatataaatggaaggaaatcattgcaatgtgatgtgataaaataatctgaacaaaattaa |
10460760 |
T |
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| Q |
407 |
caataatatt |
416 |
Q |
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| T |
10460761 |
caataatatt |
10460770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 180; Significance: 5e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 32 - 327
Target Start/End: Original strand, 23598906 - 23599204
Alignment:
| Q |
32 |
catacaagttgcggagaccagaaggcctagatgttcagaagggaagtgttttatctaaggtgcctctattgcatctgcactgcagagaactggcactccc |
131 |
Q |
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|||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| | || |||||| |||||||||| |
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| T |
23598906 |
catacaagttacggagaccagaaggcttggatgttcagaagggaagtgttttatctaaggtgcctctattgcatctacgctccagagacttggcactccc |
23599005 |
T |
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| Q |
132 |
caacattgctaagtttcttcatgtttt-aggaaagagttcagaagaacttcccccttcacttagcctgcagcctgatattcttcgctttgtcgcaacaat |
230 |
Q |
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|| ||||| || |||||||||||||| ||||| || ||||||||||||| ||||| | |||||| ||| | |||||||||||| |||||| ||||||| |
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| T |
23599006 |
gaatattgcgaattttcttcatgtttttaggaaggaattcagaagaacttaaccctttaattagcccgcaacatgatattcttcgttttgtcacaacaat |
23599105 |
T |
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| Q |
231 |
gcctaatcatatgagaattagttggaatcttatgtcatcatatttagtttg--agaaaaactattaacttgtggagaaagacatatatgtcaactaata |
327 |
Q |
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| T |
23599106 |
gcttaatcatatgagaattagttggaatcttatgtcatcatatttagtttgataaaaaaactattaacttgtggagaaagacatatatgtcaactaata |
23599204 |
T |
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