View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15039_low_10 (Length: 397)
Name: NF15039_low_10
Description: NF15039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15039_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 92 - 380
Target Start/End: Original strand, 7076404 - 7076693
Alignment:
| Q |
92 |
gctgttacaattagaaacagtcacatattaaggaaaagct-gaaacagacacaagaagaagcaaagacacctcctcacactgtttatgttctgttgtctt |
190 |
Q |
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| T |
7076404 |
gctgttacaattagaaacagtcacatattaaggaaaagcttgaaacagacacaagaagaagcaaagacacctcctcacactgtttatgttctgttgtctt |
7076503 |
T |
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| Q |
191 |
ttgtttctctttaatctggtatcttactcattaccttgctccttcttctcttctcctagctgagtttcaatctccagttatgttgaccaataatagtgct |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
7076504 |
ttgtttctctttaatctggtatcttactcattaccttgctccttcttctcttctcctagctgagtttcaatctctagttatgttgaccaataatattgct |
7076603 |
T |
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| Q |
291 |
gcaattacaagctgttgtgaagtcaaggtaccctcattttttatgttttgttacagcgaaaccatacatgagatgagaaattaatgtaag |
380 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||| |
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| T |
7076604 |
gcaattacaagctgttgtgaagtcaaggtaccctcattttttatgttttgttacggtgaaactatacatgagatgagaaattaatgtaag |
7076693 |
T |
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