View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15039_low_12 (Length: 349)
Name: NF15039_low_12
Description: NF15039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15039_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 40783422 - 40783757
Alignment:
| Q |
1 |
atgtaatagatgcgatagattgatgatgtgataagaagagagaagacatnnnnnnnn-----tgatgtgttgaatgaatatagaataaaaatgatataca |
95 |
Q |
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| T |
40783422 |
atgtaatagatgcgatagattgatgatgtgataagaagagagaagacatagaagaaaaaaaatgatgtgttgaataaatatagaataaaaatgatataca |
40783521 |
T |
|
| Q |
96 |
tatatcattgttgtttaatgattgagtatatattttgtaaacaataattgagtaatattgagaattataagcaaaaggagagtacttgacataaattatt |
195 |
Q |
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| T |
40783522 |
tatatcattgttgtttaatgattgagtatatatttcgtaaacaataattgagtaatattgagaattataagcaaaaggagagtagttgacataaattatt |
40783621 |
T |
|
| Q |
196 |
cattagagtattttgtttgacacttcattaactttgacagaaatagagacacaaatactcaataattatagtcctacttgctactaaagaaaccaatgtg |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
40783622 |
cattagagtattttgtttgacacttcattaactttgacagaaatagagacacaaatactcaataattatagtcctacttgctactaaagaaaccaatgcg |
40783721 |
T |
|
| Q |
296 |
tgttcgctaannnnnnnnaatttatatacatagtat |
331 |
Q |
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| T |
40783722 |
tgttcgctaattttttttaatttatatacatagtat |
40783757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 51169682 - 51169642
Alignment:
| Q |
1 |
atgtaatagatgcgatagattgatgatgtgataagaagaga |
41 |
Q |
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| T |
51169682 |
atgtaatagatgtgataaattgatgatgtgataagaagaga |
51169642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 42147128 - 42147164
Alignment:
| Q |
6 |
atagatgcgatagattgatgatgtgataagaagagag |
42 |
Q |
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||||||| |||||||||||||||||||||||||||| |
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| T |
42147128 |
atagatgtaatagattgatgatgtgataagaagagag |
42147164 |
T |
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