View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15039_low_14 (Length: 291)
Name: NF15039_low_14
Description: NF15039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15039_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 18 - 267
Target Start/End: Complemental strand, 10209990 - 10209741
Alignment:
| Q |
18 |
gaattcgccaagagactctccaaacataaccttcccatcaccttcatcatccccaacgacggtccaccttcaaaggctcaaaccaccgtactcacctccc |
117 |
Q |
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| T |
10209990 |
gaattcgccaagagactctccaaacataaccttcccatcaccttcatcatccccaacgacggtccaccttcaaaggctcaaacaaccgtactcacctccc |
10209891 |
T |
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| Q |
118 |
tacctaatggcatttcccacgtcttcctccctccggtcaccctctccgacatcccacccaacaccaaacctgaaccactcatgatagccaccatccttcg |
217 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10209890 |
tacctcatggcatttcccacgtcttcctccctccggtcaccctctccgacctcccacccaacaccaaacctgaaccactcatgatagccaccatccttcg |
10209791 |
T |
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| Q |
218 |
ttctctcccttctctccatcaaaccctactctctctcatgacttcccacc |
267 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10209790 |
ttctctcccttctctccatcaaaccctactctctctcatgacttcccacc |
10209741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 267
Target Start/End: Complemental strand, 10202917 - 10202668
Alignment:
| Q |
18 |
gaattcgccaagagactctccaaacataaccttcccatcaccttcatcatccccaacgacggtccaccttcaaaggctcaaaccaccgtactcacctccc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10202917 |
gaattcgccaagagactctccaaacataaccttcccatcaccttcatcatccccaacgacggtccaccttcaaaggctcaaaccaccgtactcacctccc |
10202818 |
T |
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| Q |
118 |
tacctaatggcatttcccacgtcttcctccctccggtcaccctctccgacatcccacccaacaccaaacctgaaccactcatgatagccaccatccttcg |
217 |
Q |
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||||| |||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||| ||| ||||||||| |||||||| | |||| |
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| T |
10202817 |
tacctcatggcatttcccacgtcttccttcctccgatcaccctctccgacctcccacccaacaccaaacccgaaacactcatgacagccaccaccgttcg |
10202718 |
T |
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| Q |
218 |
ttctctcccttctctccatcaaaccctactctctctcatgacttcccacc |
267 |
Q |
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| T |
10202717 |
ctctctcccttctctccatcaaaccctactctctctcatgacttcccacc |
10202668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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