View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15039_low_15 (Length: 282)
Name: NF15039_low_15
Description: NF15039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15039_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 18 - 272
Target Start/End: Original strand, 44816165 - 44816420
Alignment:
| Q |
18 |
atgtcaccaccttgaggcatcacaatcaacagttaacattttccggcacttgaacaggtaaagacggttgaaggcacttctgaactacaaatccctgctg |
117 |
Q |
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| T |
44816165 |
atgtcaccaccttgaggcatcacaatcaacagttaacatttttcggcacttgaacaggtaaagacggttgaaggcacttctgaactacaaatccctgctg |
44816264 |
T |
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| Q |
118 |
gtacccaacctggagatgtcctcgtccttgcaaggaagggtgtaccgaaattaaacagaccgtcaatacgtggtgaccacttatttactgttaaagttac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44816265 |
gtacccaacctggagatgtcctcgtccttgcaaggaagggtgtaccgaaattaaacagaccgtcaatacgtggtgaccacttatttactgttaaagttac |
44816364 |
T |
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| Q |
218 |
aataccaaaacgtatcaggtaatgagtcattttatagtttt-attttgtttctctg |
272 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
44816365 |
aataccaaaacgtatcaggtaatgagtcattttatagttttgattttgtttctctg |
44816420 |
T |
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