View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15039_low_18 (Length: 267)
Name: NF15039_low_18
Description: NF15039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15039_low_18 |
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| [»] scaffold0470 (2 HSPs) |
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Alignment Details
Target: scaffold0470 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: scaffold0470
Description:
Target: scaffold0470; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 129 - 252
Target Start/End: Complemental strand, 1852 - 1729
Alignment:
| Q |
129 |
aaaatttggtacttgacttaaggatcgaataattcgaggggttcagtcccaccatccactcgcggagagatcctattaaagctagagcatatatctccat |
228 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
1852 |
aaaatttggtacttgacttaaggatcgaataattcaaggggttcagtcccaccatccacttgcggagagatcctattaaagctagagcatatatctccat |
1753 |
T |
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| Q |
229 |
tctgagatatgtgatagagagagg |
252 |
Q |
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|||||||||||||||||||||||| |
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| T |
1752 |
tctgagatatgtgatagagagagg |
1729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0470; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 1978 - 1874
Alignment:
| Q |
1 |
ataataaatagaatagtacgagacaatacataaatgtacaagataattttttgtactccattatatttaaaggttgatgcacaagataaataatttatac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
1978 |
ataataaatagaatagtacgagacaatacataaatgtacaagataattttttgtactccattatatttgaaggttgatgcacaagataaataatttatac |
1879 |
T |
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| Q |
101 |
gacac |
105 |
Q |
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||||| |
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| T |
1878 |
gacac |
1874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 116; Significance: 4e-59; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 129 - 252
Target Start/End: Complemental strand, 6612564 - 6612441
Alignment:
| Q |
129 |
aaaatttggtacttgacttaaggatcgaataattcgaggggttcagtcccaccatccactcgcggagagatcctattaaagctagagcatatatctccat |
228 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
6612564 |
aaaatttggtacttgacttaaggatcgaataattcaaggggttcagtcccaccatccacttgcggagagatcctattaaagctagagcatatatctccat |
6612465 |
T |
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| Q |
229 |
tctgagatatgtgatagagagagg |
252 |
Q |
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|||||||||||||||||||||||| |
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| T |
6612464 |
tctgagatatgtgatagagagagg |
6612441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 6612690 - 6612586
Alignment:
| Q |
1 |
ataataaatagaatagtacgagacaatacataaatgtacaagataattttttgtactccattatatttaaaggttgatgcacaagataaataatttatac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
6612690 |
ataataaatagaatagtacgagacaatacataaatgtacaagataattttttgtactccattatatttgaaggttgatgcacaagataaataatttatac |
6612591 |
T |
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| Q |
101 |
gacac |
105 |
Q |
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||||| |
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| T |
6612590 |
gacac |
6612586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 95
Target Start/End: Complemental strand, 6581381 - 6581311
Alignment:
| Q |
21 |
agacaatacataaatgtacaagataattttttgtactccattatatttaaaggttgatgcacaagataaataatt |
95 |
Q |
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||||| |||||||||||||| || ||||||||||||||||| ||||||||||||||||||||| |||||||| |
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| T |
6581381 |
agacagtacataaatgtacatgacaattttttgtactccat----tttaaaggttgatgcacaagacaaataatt |
6581311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 129 - 220
Target Start/End: Complemental strand, 6581271 - 6581180
Alignment:
| Q |
129 |
aaaatttggtacttgacttaaggatcgaataattcgaggggttcagtcccaccatccactcgcggagagatcctattaaagctagagcatat |
220 |
Q |
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|||| |||||| ||||| |||||| | ||||| ||||||||||||||||||||||| | || ||| ||||||||||||| |||||||||| |
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| T |
6581271 |
aaaacttggtatttgacctaaggactgcataatctgaggggttcagtcccaccatccatttgctgagggatcctattaaagttagagcatat |
6581180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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