View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15039_low_2 (Length: 484)

Name: NF15039_low_2
Description: NF15039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15039_low_2
NF15039_low_2
[»] scaffold0470 (1 HSPs)
scaffold0470 (102-474)||(2093-2465)
[»] chr8 (16 HSPs)
chr8 (102-474)||(6612805-6613177)
chr8 (192-281)||(6660429-6660518)
chr8 (192-281)||(6740831-6740920)
chr8 (192-281)||(6758338-6758427)
chr8 (192-281)||(6582170-6582263)
chr8 (292-350)||(6582371-6582429)
chr8 (292-350)||(6660629-6660687)
chr8 (292-350)||(6741031-6741089)
chr8 (421-473)||(6582448-6582500)
chr8 (421-473)||(6758623-6758675)
chr8 (292-350)||(6758546-6758604)
chr8 (429-472)||(6601733-6601776)
chr8 (429-472)||(6677186-6677229)
chr8 (421-473)||(6660706-6660758)
chr8 (421-473)||(6741108-6741160)
chr8 (437-469)||(6746176-6746208)


Alignment Details
Target: scaffold0470 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 102 - 474
Target Start/End: Original strand, 2093 - 2465
Alignment:
Q  102 cactattcgaagacagaaagatggcatcacatacagacaaatacaactttgaagacttgtatatggaaaaaggaaaacataaaaatacacctttccatgc 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2093 cactattcgaagacagaaagatggcatcacatacagacaaatacaactttgaagacttgtatatggaaaaaggaaaacataaaaatacacctttccatgc 2192  T
Q  202 aattaacttcaacacaaatgtcattttagttaataataattttatctcttttctattatacattttaaatcaatttattagnnnnnnncttttcactacc 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||    
T  2193 aattaacttcaacacaaatgtcattttagttaataataattttatctcttttctattatacattttaaatcaatttattagaaaaaaacttttcactacc 2292  T
Q  302 acaaaacataaaacactatcacgtacaattaagtgtgtatttaaatttatcctcctaagtttagctaagttgatatgtgcaatacataatgcataatatg 401  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||   |||||||||    
T  2293 acaaaacataaaacactatcacgtacaattaagtgtgtatttaaatttatcctcctaagtttaactaagttgatatgtataatacatatgacataatatg 2392  T
Q  402 taaggtaaattnnnnnnnntcacggactttatcaaaaccattttgattccaaaccactcacttcaatcctatg 474  Q
    || ||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2393 tagggtaaattaaaaaaaatcacggactttatcaaaaccattttgattccaaaccactcacttcaatcctatg 2465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 300; Significance: 1e-168; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 102 - 474
Target Start/End: Original strand, 6612805 - 6613177
Alignment:
Q  102 cactattcgaagacagaaagatggcatcacatacagacaaatacaactttgaagacttgtatatggaaaaaggaaaacataaaaatacacctttccatgc 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6612805 cactattcgaagacagaaagatggcatcacatacagacaaatacaactttgaagacttgtatatggaaaaaggaaaacataaaaatacacctttccatgc 6612904  T
Q  202 aattaacttcaacacaaatgtcattttagttaataataattttatctcttttctattatacattttaaatcaatttattagnnnnnnncttttcactacc 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||    
T  6612905 aattaacttcaacacaaatgtcattttagttaataataattttatctcttttctattatacattttaaatcaatttattagaaaaaaacttttcactacc 6613004  T
Q  302 acaaaacataaaacactatcacgtacaattaagtgtgtatttaaatttatcctcctaagtttagctaagttgatatgtgcaatacataatgcataatatg 401  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||   |||||||||    
T  6613005 acaaaacataaaacactatcacgtacaattaagtgtgtatttaaatttatcctcctaagtttaactaagttgatatgtataatacatatgacataatatg 6613104  T
Q  402 taaggtaaattnnnnnnnntcacggactttatcaaaaccattttgattccaaaccactcacttcaatcctatg 474  Q
    || ||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6613105 tagggtaaattaaaaaaaatcacggactttatcaaaaccattttgattccaaaccactcacttcaatcctatg 6613177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 192 - 281
Target Start/End: Original strand, 6660429 - 6660518
Alignment:
Q  192 ctttccatgcaattaacttcaacacaaatgtcattttagttaataataattttatctcttttctattatacattttaaatcaatttatta 281  Q
    |||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||    
T  6660429 ctttccatgcaattgacttcaacacaaatgtcattttagttaatactagttttatctcttttctattatactttttaaatcaatttatta 6660518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 192 - 281
Target Start/End: Original strand, 6740831 - 6740920
Alignment:
Q  192 ctttccatgcaattaacttcaacacaaatgtcattttagttaataataattttatctcttttctattatacattttaaatcaatttatta 281  Q
    |||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||    
T  6740831 ctttccatgcaattgacttcaacacaaatgtcattttagttaatactagttttatctcttttctattatactttttaaatcaatttatta 6740920  T

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Target: chr8; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 192 - 281
Target Start/End: Original strand, 6758338 - 6758427
Alignment:
Q  192 ctttccatgcaattaacttcaacacaaatgtcattttagttaataataattttatctcttttctattatacattttaaatcaatttatta 281  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||  | |||||||||||||||||||||| ||||||||||||||||||    
T  6758338 ctttccatgcaattgacttcaacacaaaagtcattttagttaataccagttttatctcttttctattatactttttaaatcaatttatta 6758427  T

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Target: chr8; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 192 - 281
Target Start/End: Original strand, 6582170 - 6582263
Alignment:
Q  192 ctttccatgcaattaacttcaacacaaatgtcattttagttaataa----taattttatctcttttctattatacattttaaatcaatttatta 281  Q
    |||||||||||||| ||||||||||||||||||||||||||||||     || |||||||||||||||||||||| ||||||||||||||||||    
T  6582170 ctttccatgcaattgacttcaacacaaatgtcattttagttaatatatactagttttatctcttttctattatactttttaaatcaatttatta 6582263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 292 - 350
Target Start/End: Original strand, 6582371 - 6582429
Alignment:
Q  292 tttcactaccacaaaacataaaacactatcacgtacaattaagtgtgtatttaaattta 350  Q
    ||||||||||||||||| |||||||||||| |||| |||||| ||||||||||||||||    
T  6582371 tttcactaccacaaaacctaaaacactatcccgtaaaattaaatgtgtatttaaattta 6582429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 292 - 350
Target Start/End: Original strand, 6660629 - 6660687
Alignment:
Q  292 tttcactaccacaaaacataaaacactatcacgtacaattaagtgtgtatttaaattta 350  Q
    ||||||||||||||||| |||||||||||| |||| |||||||| ||||||||||||||    
T  6660629 tttcactaccacaaaacctaaaacactatcccgtataattaagtatgtatttaaattta 6660687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 292 - 350
Target Start/End: Original strand, 6741031 - 6741089
Alignment:
Q  292 tttcactaccacaaaacataaaacactatcacgtacaattaagtgtgtatttaaattta 350  Q
    ||||||||||||||||| |||||||||||| |||| |||||||| ||||||||||||||    
T  6741031 tttcactaccacaaaacctaaaacactatcccgtataattaagtatgtatttaaattta 6741089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 421 - 473
Target Start/End: Original strand, 6582448 - 6582500
Alignment:
Q  421 tcacggactttatcaaaaccattttgattccaaaccactcacttcaatcctat 473  Q
    ||||||| ||| |||||||||||||||||||||||||||||||||||| ||||    
T  6582448 tcacggattttgtcaaaaccattttgattccaaaccactcacttcaatgctat 6582500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 421 - 473
Target Start/End: Original strand, 6758623 - 6758675
Alignment:
Q  421 tcacggactttatcaaaaccattttgattccaaaccactcacttcaatcctat 473  Q
    ||||||| ||| |||||||||||||||||||||||||||||||||||| ||||    
T  6758623 tcacggattttgtcaaaaccattttgattccaaaccactcacttcaatgctat 6758675  T

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Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 292 - 350
Target Start/End: Original strand, 6758546 - 6758604
Alignment:
Q  292 tttcactaccacaaaacataaaacactatcacgtacaattaagtgtgtatttaaattta 350  Q
    ||||||||||  ||||| |||||||||||| |||| |||||||||||||||||||||||    
T  6758546 tttcactaccgtaaaacctaaaacactatcccgtataattaagtgtgtatttaaattta 6758604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 429 - 472
Target Start/End: Original strand, 6601733 - 6601776
Alignment:
Q  429 tttatcaaaaccattttgattccaaaccactcacttcaatccta 472  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||    
T  6601733 tttatcacaaccattttgattccaaaccaatcacttcaatccta 6601776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 429 - 472
Target Start/End: Original strand, 6677186 - 6677229
Alignment:
Q  429 tttatcaaaaccattttgattccaaaccactcacttcaatccta 472  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||    
T  6677186 tttatcacaaccattttgattccaaaccaatcacttcaatccta 6677229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 421 - 473
Target Start/End: Original strand, 6660706 - 6660758
Alignment:
Q  421 tcacggactttatcaaaaccattttgattccaaaccactcacttcaatcctat 473  Q
    ||||||| ||| || ||||||||||||||| |||||| |||||||||| ||||    
T  6660706 tcacggattttgtcgaaaccattttgattcgaaaccattcacttcaatgctat 6660758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 421 - 473
Target Start/End: Original strand, 6741108 - 6741160
Alignment:
Q  421 tcacggactttatcaaaaccattttgattccaaaccactcacttcaatcctat 473  Q
    ||||||| ||| || ||||||||||||||| |||||| |||||||||| ||||    
T  6741108 tcacggattttgtcgaaaccattttgattcgaaaccattcacttcaatgctat 6741160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 437 - 469
Target Start/End: Original strand, 6746176 - 6746208
Alignment:
Q  437 aaccattttgattccaaaccactcacttcaatc 469  Q
    ||||||||||||||||||||| |||||||||||    
T  6746176 aaccattttgattccaaaccagtcacttcaatc 6746208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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