View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15039_low_28 (Length: 201)
Name: NF15039_low_28
Description: NF15039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15039_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 4e-86; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 4e-86
Query Start/End: Original strand, 18 - 186
Target Start/End: Original strand, 49776093 - 49776261
Alignment:
| Q |
18 |
aaagcaaaccacaacaacagctaaattgtctccactttttctcttcaaagcctcatcaaccagatccttgctgcaaacagctgggtcgttatgctcctga |
117 |
Q |
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| T |
49776093 |
aaagcaaaccacaacaaccgctaaattgtctccactttttctcttcaaggcctcatcaaccagatccttgctgcaaacagctgggtcgttatgctcctga |
49776192 |
T |
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| Q |
118 |
agcctgcgccgtgcaaaatctacagcattttggcttctaaaaacatcccaaatcccatcgcagcctatg |
186 |
Q |
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| T |
49776193 |
agcctgcgccgtgcaaaatctacagcattttggcttctaaaaacatcccaaatcccatcgcagcctatg |
49776261 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 178
Target Start/End: Complemental strand, 48230890 - 48230842
Alignment:
| Q |
130 |
gcaaaatctacagcattttggcttctaaaaacatcccaaatcccatcgc |
178 |
Q |
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| T |
48230890 |
gcaaaatctacagcgttttggctacgaaaaacatcccatattccatcgc |
48230842 |
T |
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