View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15039_low_5 (Length: 453)
Name: NF15039_low_5
Description: NF15039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15039_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 17 - 441
Target Start/End: Original strand, 18005872 - 18006299
Alignment:
| Q |
17 |
catccatctcttcaacattgtaataggaaaacaaaccatgcatgcttgactaattttgagttagc--aaannnnnnngcaatcctttcaaatttagttgg |
114 |
Q |
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| T |
18005872 |
catccatctcctcaacattgtaataggaaaacaaaccatgcatgcttggctaattttgagttagcttaattcagtttgcaatcctttcaaatttagttgg |
18005971 |
T |
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| Q |
115 |
ctaaaatttttactccataacaatattcatattaatccattcaatttgcacatacattcttgtccttatagtgatttttcatcaaattatttgttaaatt |
214 |
Q |
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| T |
18005972 |
ctaaattttttactccataacaatattcatattaatccattcaaattgcacatgcattcttgtccttatagtgatttttcatcaaattatttgttaaatt |
18006071 |
T |
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| Q |
215 |
atgaaatgtcacattaaaataatactatcctacaattctcaaaatcttacaaagggatcacaaaaaactaaggcaccaaccatataaaatggatcatcaa |
314 |
Q |
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| T |
18006072 |
atgaaatgtcacattaaaataatactatcctacaattctcaaaatcttacaaagggatcacaaaaaactaaggcaccaaccatataaaatggatcatcaa |
18006171 |
T |
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| Q |
315 |
actcaaatctctgccttgaaacttgagttcaatattctgcttagatctttgaaaaaccaagtagtaaaaaattgaaactttaagtttattaatgacatc- |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
18006172 |
actcaaatctctgccttgaaacttgagttcaatattctgtttagatctttgaaaaaccaagtagtaaaatattgaaactttaagtttattaatgacatca |
18006271 |
T |
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| Q |
414 |
aatcccccaaatttagattatttatgat |
441 |
Q |
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| T |
18006272 |
aagcccccaaatttagattatttatgat |
18006299 |
T |
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