View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15039_low_6 (Length: 430)

Name: NF15039_low_6
Description: NF15039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15039_low_6
NF15039_low_6
[»] chr8 (2 HSPs)
chr8 (1-422)||(20232577-20232999)
chr8 (53-87)||(14019786-14019820)
[»] chr7 (4 HSPs)
chr7 (1-422)||(44314484-44314906)
chr7 (53-88)||(27585233-27585268)
chr7 (53-86)||(24240270-24240303)
chr7 (1-37)||(27585295-27585331)
[»] chr1 (4 HSPs)
chr1 (198-328)||(39637451-39637581)
chr1 (198-328)||(39646119-39646249)
chr1 (53-86)||(51722232-51722265)
chr1 (1-37)||(45443259-45443295)
[»] chr2 (4 HSPs)
chr2 (53-88)||(14280257-14280292)
chr2 (53-87)||(32810968-32811002)
chr2 (53-86)||(11349885-11349918)
chr2 (53-86)||(11350279-11350312)
[»] chr6 (2 HSPs)
chr6 (53-89)||(26842696-26842732)
chr6 (53-86)||(25183982-25184015)
[»] chr3 (3 HSPs)
chr3 (53-86)||(10450516-10450549)
chr3 (53-86)||(10450740-10450773)
chr3 (53-86)||(15820697-15820730)


Alignment Details
Target: chr8 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Original strand, 20232577 - 20232999
Alignment:
Q  1 ttgtacggttaggagtgcctcttttttataaactcttattcattaatcataaggactaaatcccacctgagtgttggctgctaacaataagctcgtctgg 100  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||  ||||||||||||||||||||    
T  20232577 ttgtacggttaggagtgcctcccttttataaactcttattcattaatcataaggactaaatcccacccgagtgttagccactaacaataagctcgtctgg 20232676  T
Q  101 gacgtgtaattatttacagtatttatttgattttacttcattttttgatggtctcagaatcaaagttcaatatatctgaactggctttttctttatatca 200  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  20232677 gatgtgtaattatttacagtatttatttgattttacttcattttttgatggtctcagaatcaaagttcaatatatctgaactagctttttctttatatca 20232776  T
Q  201 ggtaaaagacgtagtagtggaagttgtggaaggagatgctagaaatgttctctgtgatgctgtggagaagcaccatgcttcgattttggtcgtaggtagt 300  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||    
T  20232777 ggtaaaagacgtagtagtggaagttgtggatggagatgctagaaatgttctctgtgatgctgtggacaagcaccatgcttctattttggttgtaggtagt 20232876  T
Q  301 catggttatggagctataaaaaggtatgtgttcattcagatcccaattatcatgctattgcattgcgataatagctttaaaggagtctgat-aatactta 399  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  20232877 catggttacggagctataaaaaggtatgtgttcattcagatcccaattatcatgctattgcattgcgataatagctttaaaggagtctgataaatactta 20232976  T
Q  400 tcctcgtactttctagtattatc 422  Q
    | || ||||||||||||||||||    
T  20232977 tactggtactttctagtattatc 20232999  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 87
Target Start/End: Complemental strand, 14019820 - 14019786
Alignment:
Q  53 ggactaaatcccacctgagtgttggctgctaacaa 87  Q
    ||||||||||||||| |||||||||||||||||||    
T  14019820 ggactaaatcccacccgagtgttggctgctaacaa 14019786  T

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Target: chr7 (Bit Score: 355; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Original strand, 44314484 - 44314906
Alignment:
Q  1 ttgtacggttaggagtgcctcttttttataaactcttattcattaatcataaggactaaatcccacctgagtgttggctgctaacaataagctcgtctgg 100  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||  ||||||||||||||||||||    
T  44314484 ttgtacggttaggagtgcctcccttttataaactcttattcattaatcataaggactaaatcccacccgagtgttagccactaacaataagctcgtctgg 44314583  T
Q  101 gacgtgtaattatttacagtatttatttgattttacttcattttttgatggtctcagaatcaaagttcaatatatctgaactggctttttctttatatca 200  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  44314584 gatgtgtaattatttacagtatttatttgattttacttcattttttgatggtctcagaatcaaagttcaatatatctgaactagctttttctttatatca 44314683  T
Q  201 ggtaaaagacgtagtagtggaagttgtggaaggagatgctagaaatgttctctgtgatgctgtggagaagcaccatgcttcgattttggtcgtaggtagt 300  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||    
T  44314684 ggtaaaagacgtagtagtggaagttgtggatggagatgctagaaatgttctctgtgatgctgtggacaagcaccatgcttctattttggttgtaggtagt 44314783  T
Q  301 catggttatggagctataaaaaggtatgtgttcattcagatcccaattatcatgctattgcattgcgataatagctttaaaggagtctgat-aatactta 399  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  44314784 catggttacggagctataaaaaggtatgtgttcattcagatcccaattatcatgctattgcattgcgataatagctttaaaggagtctgataaatactta 44314883  T
Q  400 tcctcgtactttctagtattatc 422  Q
    | || ||||||||||||||||||    
T  44314884 tactggtactttctagtattatc 44314906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 53 - 88
Target Start/End: Complemental strand, 27585268 - 27585233
Alignment:
Q  53 ggactaaatcccacctgagtgttggctgctaacaat 88  Q
    ||||||||||||||||||||||||||||||||||||    
T  27585268 ggactaaatcccacctgagtgttggctgctaacaat 27585233  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 86
Target Start/End: Original strand, 24240270 - 24240303
Alignment:
Q  53 ggactaaatcccacctgagtgttggctgctaaca 86  Q
    ||||||||||||||||||| ||||||||||||||    
T  24240270 ggactaaatcccacctgagagttggctgctaaca 24240303  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 27585331 - 27585295
Alignment:
Q  1 ttgtacggttaggagtgcctcttttttataaactctt 37  Q
    ||||||||| ||||||||||| |||||||||||||||    
T  27585331 ttgtacggtgaggagtgcctcctttttataaactctt 27585295  T

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Target: chr1 (Bit Score: 59; Significance: 7e-25; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 198 - 328
Target Start/End: Complemental strand, 39637581 - 39637451
Alignment:
Q  198 tcaggtaaaagacgtagtagtggaagttgtggaaggagatgctagaaatgttctctgtgatgctgtggagaagcaccatgcttcgattttggtcgtaggt 297  Q
    ||||||||| || ||| |||| || || |||||||| |||||||||||||||||||||||| | ||||| ||| ||| |||||| || ||||| || |||    
T  39637581 tcaggtaaatgatgtaatagtagaggtggtggaaggtgatgctagaaatgttctctgtgatacagtggaaaagtaccgtgcttcaatcttggttgtgggt 39637482  T
Q  298 agtcatggttatggagctataaaaaggtatg 328  Q
    ||||| |||||||| ||||||||||||||||    
T  39637481 agtcacggttatggggctataaaaaggtatg 39637451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 198 - 328
Target Start/End: Complemental strand, 39646249 - 39646119
Alignment:
Q  198 tcaggtaaaagacgtagtagtggaagttgtggaaggagatgctagaaatgttctctgtgatgctgtggagaagcaccatgcttcgattttggtcgtaggt 297  Q
    ||||||||| || ||| |||| || || |||||||| |||||||||||||||||||||||| | ||||| ||| ||| |||||| || ||||| || |||    
T  39646249 tcaggtaaatgatgtaatagtagaggtggtggaaggtgatgctagaaatgttctctgtgatacagtggaaaagtaccgtgcttcaatcttggttgtgggt 39646150  T
Q  298 agtcatggttatggagctataaaaaggtatg 328  Q
    ||||| |||||||| ||||||||||||||||    
T  39646149 agtcacggttatggggctataaaaaggtatg 39646119  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 86
Target Start/End: Complemental strand, 51722265 - 51722232
Alignment:
Q  53 ggactaaatcccacctgagtgttggctgctaaca 86  Q
    ||||||||||||||| ||||||||||||||||||    
T  51722265 ggactaaatcccacccgagtgttggctgctaaca 51722232  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 45443295 - 45443259
Alignment:
Q  1 ttgtacggttaggagtgcctcttttttataaactctt 37  Q
    ||||||||||||||||||||| | |||||||||||||    
T  45443295 ttgtacggttaggagtgcctcatctttataaactctt 45443259  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 53 - 88
Target Start/End: Complemental strand, 14280292 - 14280257
Alignment:
Q  53 ggactaaatcccacctgagtgttggctgctaacaat 88  Q
    ||||||||||||||||||||||||||||||||||||    
T  14280292 ggactaaatcccacctgagtgttggctgctaacaat 14280257  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 87
Target Start/End: Original strand, 32810968 - 32811002
Alignment:
Q  53 ggactaaatcccacctgagtgttggctgctaacaa 87  Q
    ||||||||||||||| |||||||||||||||||||    
T  32810968 ggactaaatcccacccgagtgttggctgctaacaa 32811002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 86
Target Start/End: Original strand, 11349885 - 11349918
Alignment:
Q  53 ggactaaatcccacctgagtgttggctgctaaca 86  Q
    ||||||||||||||| ||||||||||||||||||    
T  11349885 ggactaaatcccacccgagtgttggctgctaaca 11349918  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 86
Target Start/End: Original strand, 11350279 - 11350312
Alignment:
Q  53 ggactaaatcccacctgagtgttggctgctaaca 86  Q
    ||||||||||||||| ||||||||||||||||||    
T  11350279 ggactaaatcccacccgagtgttggctgctaaca 11350312  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 89
Target Start/End: Complemental strand, 26842732 - 26842696
Alignment:
Q  53 ggactaaatcccacctgagtgttggctgctaacaata 89  Q
    ||||||||||||||| |||||||||||||||||||||    
T  26842732 ggactaaatcccacccgagtgttggctgctaacaata 26842696  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 86
Target Start/End: Complemental strand, 25184015 - 25183982
Alignment:
Q  53 ggactaaatcccacctgagtgttggctgctaaca 86  Q
    ||||||||||||||| ||||||||||||||||||    
T  25184015 ggactaaatcccacccgagtgttggctgctaaca 25183982  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 86
Target Start/End: Original strand, 10450516 - 10450549
Alignment:
Q  53 ggactaaatcccacctgagtgttggctgctaaca 86  Q
    ||||||||||||||| ||||||||||||||||||    
T  10450516 ggactaaatcccacccgagtgttggctgctaaca 10450549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 86
Target Start/End: Original strand, 10450740 - 10450773
Alignment:
Q  53 ggactaaatcccacctgagtgttggctgctaaca 86  Q
    ||||||||||||||| ||||||||||||||||||    
T  10450740 ggactaaatcccacccgagtgttggctgctaaca 10450773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 86
Target Start/End: Original strand, 15820697 - 15820730
Alignment:
Q  53 ggactaaatcccacctgagtgttggctgctaaca 86  Q
    ||||||||||||||| ||||||||||||||||||    
T  15820697 ggactaaatcccacccgagtgttggctgctaaca 15820730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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