View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15039_low_8 (Length: 423)
Name: NF15039_low_8
Description: NF15039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15039_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 9 - 404
Target Start/End: Complemental strand, 7790978 - 7790583
Alignment:
| Q |
9 |
ggtagattattctcatccatacacaactagtattgtttaggtggaaatacttgacatacgcactcattttgaaaacaagtagtaacacctcctggcgctc |
108 |
Q |
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| T |
7790978 |
ggtatattattctcatccatacacaactagtattgtttaggtggaaatacttgacatacacactcatgttgaaaacaagtagtaacacctcccggcgctc |
7790879 |
T |
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| Q |
109 |
tattacaatcagggaggatacaattaatacaatcactgtcacttttgcaggatgaacaattgccattatcatttgtatgaatcagagaggatacaatttc |
208 |
Q |
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| T |
7790878 |
tattacaatcagggaggatacaattaatacaatcactgtcacttttgcaggatgaacaattgccattatcatttgtatgaatcagagaggatacaatttc |
7790779 |
T |
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| Q |
209 |
actattcattcttccttctacataatccatgcacatatctgcatacataaacaatacatgaaatttattagaacaatgtttttatgtaacatgtgaaatt |
308 |
Q |
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| T |
7790778 |
actattcattcttccttctacataatccatgcacatatctgcatacataaacaatacatgaaatttattagaacaatgtttttatgtaacatgtgaaatt |
7790679 |
T |
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| Q |
309 |
tatatttgatgtatcatttgatgaaaaataaatcaaaacaaacctgaggaaatgattaataaagcaatcaacaatgtgaaactgagaggtgaatgt |
404 |
Q |
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| T |
7790678 |
tatatttgatgtatcatttgatgaaaaataaatcaaaacaaacctgaggaaatgattaacaaagcaatcaacaatgtgaaactgagagctgaatgt |
7790583 |
T |
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