View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1503R-Insertion-10 (Length: 313)
Name: NF1503R-Insertion-10
Description: NF1503R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1503R-Insertion-10 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 9 - 312
Target Start/End: Complemental strand, 8314624 - 8314308
Alignment:
| Q |
9 |
ttgatttcgtaacttcttcaaatggtacgatgaagcttgttctgaaagagaggagagacttataaatgctttgttgaggaaaaatgattcaccagaaaaa |
108 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||| |
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| T |
8314624 |
ttgattttgtaacttcttcaaatggtacgatgaagcttgttctgaaagagagaagaaacttataaatgctttgttgaggaaaaatgattcactggaaaaa |
8314525 |
T |
|
| Q |
109 |
atgaacagaaaaattgttagaggagttgtatgtttaggattgattgtaatgttccttttggttgtgattttaatgttgaaggtctgatgta--------- |
199 |
Q |
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| T |
8314524 |
atgaacagaaaaattgttaaaggagttgtatgtttaggattgattgtaatgttccttgtggttgtgattttaatgttgaaggtctgatgtaatgtttaag |
8314425 |
T |
|
| Q |
200 |
-----atgtaatgttgaagttcgttttgagttgtgacagtgttgaagttgtaatgtaatgttgaagttctttttgaacaagataatgttaaaattctaat |
294 |
Q |
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| T |
8314424 |
atgtaatgtaatgttgaagttctttttgatttgtgacaatgttgaagttgtaatgtaatgttgaagttctttttgatcaagataatgttaaaatt-taat |
8314326 |
T |
|
| Q |
295 |
gattgtggatacattgtt |
312 |
Q |
| |
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|||||||||||||||||| |
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| T |
8314325 |
gattgtggatacattgtt |
8314308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 9 - 271
Target Start/End: Complemental strand, 39691528 - 39691252
Alignment:
| Q |
9 |
ttgatttcgtaacttcttcaaatggtacgatgaagcttgttctgaaagagaggagagacttataaatgctttgttgaggaaaaatgattcaccagaaaaa |
108 |
Q |
| |
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||||||| |||||||||||||||||||||||||| |||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||| |||||| |
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| T |
39691528 |
ttgattttgtaacttcttcaaatggtacgatgaatcttgttcttaaagagagaagaaacttataaatgctttgttgaggaaaaatgattcactggaaaaa |
39691429 |
T |
|
| Q |
109 |
atgaacagaaaaattgttagaggagttgtatgtttaggattgattgtaatgttccttttggttgtgattttaatgttgaaggtctgatgta--------- |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
39691428 |
atgaacagaaaaattgttagaggagttgtatgtttaggattgattgtaatgttccttatggttgtgattttaatgttgaaggtctgatgtaatgtttaag |
39691329 |
T |
|
| Q |
200 |
-----atgtaatgttgaagttcgttttgagttgtgacagtgttgaagttgtaatgtaatgttgaagttctttttgaa |
271 |
Q |
| |
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||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
39691328 |
atgtaatgtaatgttgaagttctttttgagttgtgacaatgttgaagttgtaatgtaatgttgaagttctttttgaa |
39691252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 194 - 309
Target Start/End: Complemental strand, 39691210 - 39691088
Alignment:
| Q |
194 |
gatgtaatgtaatgttgaagttcgttttgagttgtgacagtgttgaagttgtaatgtaatgttgaagttctttttgaa--------caagataatgttaa |
285 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| || ||||||||||||||||| |||||||||||||||||||| ||||||||||||| |
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| T |
39691210 |
gatgtaatgtaatgttgaagttctttttgagttgtgccaatgttgaagttgtaatgtgatgttgaagttctttttgaaggattgagtaagataatgttaa |
39691111 |
T |
|
| Q |
286 |
aattctaatgattgtggatacatt |
309 |
Q |
| |
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|||| ||||||||||||||||||| |
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| T |
39691110 |
aatt-taatgattgtggatacatt |
39691088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 39691217 - 39691181
Alignment:
| Q |
234 |
tgttgaagttgtaatgtaatgttgaagttctttttga |
270 |
Q |
| |
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|||| ||| |||||||||||||||||||||||||||| |
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| T |
39691217 |
tgtttaagatgtaatgtaatgttgaagttctttttga |
39691181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 131; Significance: 6e-68; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 9 - 309
Target Start/End: Complemental strand, 15443387 - 15443083
Alignment:
| Q |
9 |
ttgatttcgtaacttcttcaaatggtacgatgaagcttgttctgaaagagaggagagacttataaatgctttgttgaggaaaaatgattcaccagaaaaa |
108 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||| | ||||||||| ||||||||| ||||| |
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| T |
15443387 |
ttgattttgtaacttcttcaaatggtacgatgaagcttgttctgaaaaagagaagaaaattataaatgttttgttgag-----------------aaaaa |
15443305 |
T |
|
| Q |
109 |
atgaacagaaaaattgttagaggagttgtatgtttaggattgattgtaatgttccttttggttgtgattttaatgttgaaggtct--------------g |
194 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| | |
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| T |
15443304 |
atgaacagaaaaattgttagaggagttgtatgtttaggattgattgtaatgttccttgtggttgtgatttcaatgttgaaggtctcatgtaatgtttaag |
15443205 |
T |
|
| Q |
195 |
atgtaatgtaatgttgaagttcgttttgagttgtgacagtgttgaagttgtaatgtaatgttgaagttctttttgaa--------caagataatgttaaa |
286 |
Q |
| |
|
||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
15443204 |
atgcaatgtaatgttgaagttctttttgagttgtgacaatgttgaagttgtaatgtaatgttgaagttctttttgaaggattgagcaagataatgttaaa |
15443105 |
T |
|
| Q |
287 |
attctaatgattgtggatacatt |
309 |
Q |
| |
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| | ||||||| ||||||||||| |
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| T |
15443104 |
agt-taatgatcgtggatacatt |
15443083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 17 - 187
Target Start/End: Complemental strand, 5379371 - 5379201
Alignment:
| Q |
17 |
gtaacttcttcaaatggtacgatgaagcttgttctgaaagagaggagagacttataaatgctttgttgaggaaaaatgattcaccagaaaaaatgaacag |
116 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||| |||||| ||| ||||| |||||| || ||| |||||| |||| || | || ||||| |
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| T |
5379371 |
gtaacttcttcaaatggtacgatgaagcatgttctgagagagagaagaagcttatcaatgctctgctgaagaaaaacgatttactgcagaattcgaacaa |
5379272 |
T |
|
| Q |
117 |
aaaaattgttagaggagttgtatgtttaggattgattgtaatgttccttttggttgtgattttaatgttga |
187 |
Q |
| |
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||| |||||| |||| ||||||||||||| |||||||||||||||| ||| |||||||| ||||||||| |
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| T |
5379271 |
caaacttgttataggaattgtatgtttaggtttgattgtaatgttccagttgattgtgattgtaatgttga |
5379201 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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