View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1503R-Insertion-12 (Length: 680)

Name: NF1503R-Insertion-12
Description: NF1503R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1503R-Insertion-12
NF1503R-Insertion-12
[»] chr2 (31 HSPs)
chr2 (9-505)||(44614858-44615336)
chr2 (420-679)||(44623935-44624196)
chr2 (566-680)||(44614743-44614857)
chr2 (9-223)||(44624513-44624709)
chr2 (10-68)||(39138517-39138575)
chr2 (10-68)||(39152930-39152988)
chr2 (94-144)||(44749611-44749661)
chr2 (500-585)||(39137894-39137979)
chr2 (504-605)||(39152579-39152680)
chr2 (504-605)||(39459256-39459357)
chr2 (10-67)||(39604188-39604245)
chr2 (10-67)||(44895360-44895417)
chr2 (9-68)||(39473022-39473081)
chr2 (525-587)||(39161864-39161926)
chr2 (525-587)||(39207268-39207330)
chr2 (525-603)||(39389096-39389174)
chr2 (504-606)||(39397787-39397889)
chr2 (504-608)||(39370109-39370213)
chr2 (10-50)||(39396905-39396945)
chr2 (423-466)||(39414622-39414665)
chr2 (453-504)||(39421698-39421749)
chr2 (105-160)||(39473136-39473191)
chr2 (9-59)||(39196762-39196812)
chr2 (9-59)||(39223594-39223644)
chr2 (81-151)||(39387860-39387930)
chr2 (10-67)||(39099459-39099516)
chr2 (10-47)||(39144488-39144525)
chr2 (10-59)||(39216537-39216586)
chr2 (556-605)||(39468343-39468392)
chr2 (10-47)||(39493692-39493729)
chr2 (105-142)||(44895473-44895510)
[»] chr8 (4 HSPs)
chr8 (453-610)||(45342049-45342206)
chr8 (87-288)||(45342640-45342828)
chr8 (420-461)||(45342230-45342271)
chr8 (9-57)||(44950121-44950169)
[»] chr5 (4 HSPs)
chr5 (11-215)||(17060370-17060574)
chr5 (423-461)||(17059656-17059694)
chr5 (9-59)||(33562169-33562219)
chr5 (455-496)||(17059589-17059630)
[»] chr6 (2 HSPs)
chr6 (525-605)||(16113303-16113383)
chr6 (10-50)||(16114256-16114296)
[»] chr7 (3 HSPs)
chr7 (423-455)||(19808027-19808059)
chr7 (10-50)||(19808795-19808835)
chr7 (500-578)||(19807851-19807929)


Alignment Details
Target: chr2 (Bit Score: 356; Significance: 0; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 9 - 505
Target Start/End: Complemental strand, 44615336 - 44614858
Alignment:
Q  9 agtattatatccaaaacaagttttgctggatctgatgattctcgcaaattatctagaatgccaatttcctcgcttgtgccatcaatggtaatactgaatt 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44615336 agtattatatccaaaacaagttttgctggatctgatgattctcgcaaattatctagaatgccaatttcctcgcttgtgccatcaatggtaatactgaatt 44615237  T
Q  109 ggtcatccatgttagatgtatctgcatatttagaaagcagatagtcaagctctttgatcatatttacttaagcaacaaaaattgaaggtgacaaaaggaa 208  Q
    ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  44615236 ggtcatccatgttagatatatctgcatatttagatagcagatagtcaagctctttgatcatatttacttaagcaacaaaaattgaaggtgac--aaggaa 44615139  T
Q  209 ttaaaaaagatatatactatgaaagcatgtgagaaagaaaaacattatactaacagtttcaaagtcaatatagaaccttagtgaattattggagtagtgt 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             
T  44615138 ttaaaaaagatatatactatgaaagcatgtgagaaagaaaaacattatactaacagtttcaaagtcaatatagaaccttagtgaattattg--------- 44615048  T
Q  309 ttagttgataaatattatatccaaaactccaaataggattattatgtgtgtgatatagaatagttgaatagcaagtactgcattaacatcattaaatta- 407  Q
               |||||||| |||||||| ||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||     
T  44615047 -----------atattatagccaaaactacaaataggactattatttgtgtgatatagaatagttgaattgcaagtactgcattaacatcattaaattat 44614959  T
Q  408 ---ttannnnnnnnaaatatgtagatcaggttattaaaaatatcaacatcaataaaatagatgaatagcaacatttaccaaattctttttcctcatcaaa 504  Q
       |||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44614958 tatttattttttttaaatatgtagatcaggttattaaaaatatcaacatcaataaaatagatgaatagcaacatttaccaaattctttttcctcatcaaa 44614859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 420 - 679
Target Start/End: Complemental strand, 44624196 - 44623935
Alignment:
Q  420 aatatgtagatcaggttattaaaaatatcaacatcaataaaata--gatgaatagcaacatttaccaaattctttttcctcatcaaattgtttctctgtc 517  Q
    ||||| |||||| ||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||||||||| ||||||  |||||||||||||    
T  44624196 aatatatagatctggttattaaaaatatcaacatcaataaaagaaagatgaatagcaacatttaccaaattctttttcttcatcatgttgtttctctgtc 44624097  T
Q  518 agatcaagctcctttagttgtccaccaaaattattcagctttgactcaagatccttgatttgtacttcaatctgattctcttttaactcgagtgctttga 617  Q
    |  |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  44624096 aactcaagctcctttggttgtccaccaaaattattcagctttgacttaagatccttgatttgtacttcaatctgattctcttttaattcgagtgctttga 44623997  T
Q  618 cagatttgagattgtcctcagtttggttttcaatttgctgcatttttccttcaaattcctct 679  Q
    ||||||||||||||||||||  ||| ||||||| ||||||||||||| |||| |||| ||||    
T  44623996 cagatttgagattgtcctcaacttgattttcaaattgctgcatttttacttcgaatttctct 44623935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 566 - 680
Target Start/End: Complemental strand, 44614857 - 44614743
Alignment:
Q  566 agatccttgatttgtacttcaatctgattctcttttaactcgagtgctttgacagatttgagattgtcctcagtttggttttcaatttgctgcatttttc 665  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44614857 agatccttgatttgtacttcaatctgattctcttttaactcgagtgctttgacagatttgagattgtcctcagtttggttttcaatttgctgcatttttc 44614758  T
Q  666 cttcaaattcctcta 680  Q
    |||||||||||||||    
T  44614757 cttcaaattcctcta 44614743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 9 - 223
Target Start/End: Complemental strand, 44624709 - 44624513
Alignment:
Q  9 agtattatatccaaaacaagttttgctggatctgatgattctcgcaaattatctagaatgccaatttcctcgcttgtgccatcaatggtaatactgaatt 108  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||  ||||||                    
T  44624709 agtattatatccaaaacaatttttgctggatctgatgattctcgcaaattatcaagaatgtcaatttcctcacttgctccatca---------------- 44624626  T
Q  109 ggtcatccatgttagatgtatctgcatatttagaaagcagatagtcaagctctttgatcatatttacttaagcaacaaaaattgaaggtgacaaaaggaa 208  Q
      |||||||||| ||||||||||||||||||||| |||||||||| ||||| | |||||||||||||  || ||||||||| |||||||||  | |||||    
T  44624625 --tcatccatgtaagatgtatctgcatatttagatagcagatagttaagctttctgatcatatttacagaaacaacaaaaaatgaaggtgatcataggaa 44624528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 10 - 68
Target Start/End: Complemental strand, 39138575 - 39138517
Alignment:
Q  10 gtattatatccaaaacaagttttgctggatctgatgattctcgcaaattatctagaatg 68  Q
    |||||||||||||||||| |||||||||||||||||||||| ||| |||| ||||||||    
T  39138575 gtattatatccaaaacaacttttgctggatctgatgattcttgcagattaactagaatg 39138517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 68
Target Start/End: Complemental strand, 39152988 - 39152930
Alignment:
Q  10 gtattatatccaaaacaagttttgctggatctgatgattctcgcaaattatctagaatg 68  Q
    ||||||||||||| |||| |||||||||||||||||||||| |||  ||||||||||||    
T  39152988 gtattatatccaacacaatttttgctggatctgatgattcttgcaggttatctagaatg 39152930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 144
Target Start/End: Original strand, 44749611 - 44749661
Alignment:
Q  94 tggtaatactgaattggtcatccatgttagatgtatctgcatatttagaaa 144  Q
    |||| |||||| |||| ||||||||||||||||||||||||||||||||||    
T  44749611 tggttatactgtattgatcatccatgttagatgtatctgcatatttagaaa 44749661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 500 - 585
Target Start/End: Complemental strand, 39137979 - 39137894
Alignment:
Q  500 tcaaattgtttctctgtcagatcaagctcctttagttgtccaccaaaattattcagctttgactcaagatccttgatttgtacttc 585  Q
    |||||||||||||||||||| ||| ||||||| | ||||||| |||| |||| |||||||||  || |||||||||| ||| ||||    
T  39137979 tcaaattgtttctctgtcagttcaggctccttcaattgtccatcaaatttatccagctttgaaccaggatccttgatctgtccttc 39137894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 504 - 605
Target Start/End: Complemental strand, 39152680 - 39152579
Alignment:
Q  504 attgtttctctgtcagatcaagctcctttagttgtccaccaaaattattcagctttgactcaagatccttgatttgtacttcaatctgattctcttttaa 603  Q
    ||||||||||||||| |||| |||||||    |||||| ||   ||||| |||||||||||||||||||||  || |||||||| ||| |||||||||||    
T  39152680 attgtttctctgtcaaatcatgctccttcgactgtccatcatgtttatttagctttgactcaagatccttggcttctacttcaagctgcttctcttttaa 39152581  T
Q  604 ct 605  Q
    ||    
T  39152580 ct 39152579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 504 - 605
Target Start/End: Complemental strand, 39459357 - 39459256
Alignment:
Q  504 attgtttctctgtcagatcaagctcctttagttgtccaccaaaattattcagctttgactcaagatccttgatttgtacttcaatctgattctcttttaa 603  Q
    |||||||| ||||||  ||| ||||||| | ||||||| |||||||||| |||||||||||  ||||||||| |||| ||||||  || || ||||||||    
T  39459357 attgtttcactgtcaactcaggctccttcacttgtccatcaaaattattaagctttgactctggatccttgacttgtccttcaaattgcttgtcttttaa 39459258  T
Q  604 ct 605  Q
    ||    
T  39459257 ct 39459256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 10 - 67
Target Start/End: Complemental strand, 39604245 - 39604188
Alignment:
Q  10 gtattatatccaaaacaagttttgctggatctgatgattctcgcaaattatctagaat 67  Q
    |||||||||||||||||| ||||| ||||||||||||| || ||| ||||||||||||    
T  39604245 gtattatatccaaaacaacttttgatggatctgatgatccttgcagattatctagaat 39604188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 10 - 67
Target Start/End: Original strand, 44895360 - 44895417
Alignment:
Q  10 gtattatatccaaaacaagttttgctggatctgatgattctcgcaaattatctagaat 67  Q
    ||||||||||||||||||||||||| |||| |||||||||||||| | || |||||||    
T  44895360 gtattatatccaaaacaagttttgcaggatttgatgattctcgcagagtaactagaat 44895417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 39473022 - 39473081
Alignment:
Q  9 agtattatatccaaaacaagttttgctggatctgatgattctcgcaaattatctagaatg 68  Q
    ||||||||||||| ||||| |||||||||||||||||||||| ||| || | ||||||||    
T  39473022 agtattatatccagaacaaattttgctggatctgatgattcttgcagatcaactagaatg 39473081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 525 - 587
Target Start/End: Complemental strand, 39161926 - 39161864
Alignment:
Q  525 gctcctttagttgtccaccaaaattattcagctttgactcaagatccttgatttgtacttcaa 587  Q
    ||||||||||||||||| |||| ||||||| |||||||| | ||||||||| |||| ||||||    
T  39161926 gctcctttagttgtccatcaaatttattcatctttgacttaggatccttgacttgtccttcaa 39161864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 525 - 587
Target Start/End: Original strand, 39207268 - 39207330
Alignment:
Q  525 gctcctttagttgtccaccaaaattattcagctttgactcaagatccttgatttgtacttcaa 587  Q
    ||||||||||||||||| |||| ||||||| |||||||| | ||||||||| |||| ||||||    
T  39207268 gctcctttagttgtccatcaaatttattcatctttgacttaggatccttgacttgtccttcaa 39207330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 525 - 603
Target Start/End: Original strand, 39389096 - 39389174
Alignment:
Q  525 gctcctttagttgtccaccaaaattattcagctttgactcaagatccttgatttgtacttcaatctgattctcttttaa 603  Q
    ||||||||| ||||||| |||| |||||||||||||||||| |||| |||| |||  |||||| ||| || ||||||||    
T  39389096 gctcctttatttgtccatcaaatttattcagctttgactcaggatcgttgacttgcccttcaaactgcttttcttttaa 39389174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 504 - 606
Target Start/End: Original strand, 39397787 - 39397889
Alignment:
Q  504 attgtttctctgtcagatcaagctcctttagttgtccaccaaaattattcagctttgactcaagatccttgatttgtacttcaatctgattctcttttaa 603  Q
    |||||||| ||||||  ||| ||||||| ||||||||| |||| |||| |||| |||||||||| ||||||| | |  || ||| ||| |||||||||||    
T  39397787 attgtttccctgtcaactcaggctccttcagttgtccatcaaatttatccagccttgactcaagttccttgactcgacctgcaacctgcttctcttttaa 39397886  T
Q  604 ctc 606  Q
    |||    
T  39397887 ctc 39397889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 504 - 608
Target Start/End: Complemental strand, 39370213 - 39370109
Alignment:
Q  504 attgtttctctgtcagatcaagctcctttagttgtccaccaaaattattcagctttgactcaagatccttgatttgtacttcaatctgattctcttttaa 603  Q
    ||||||||| ||||   ||| ||| ||||||||||||| | || ||||||| ||||||||||||| |||||| ||||  | ||| ||| |||||||||||    
T  39370213 attgtttctttgtcgactcaggcttctttagttgtccatccaatttattcatctttgactcaagacccttgacttgtcttccaaactgcttctcttttaa 39370114  T
Q  604 ctcga 608  Q
     ||||    
T  39370113 ttcga 39370109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 39396905 - 39396945
Alignment:
Q  10 gtattatatccaaaacaagttttgctggatctgatgattct 50  Q
    |||||||||||||||||||| ||| ||||||||||||||||    
T  39396905 gtattatatccaaaacaagtcttgatggatctgatgattct 39396945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 423 - 466
Target Start/End: Original strand, 39414622 - 39414665
Alignment:
Q  423 atgtagatcaggttattaaaaatatcaacatcaataaaatagat 466  Q
    ||||||||||| ||||||||||||||||||||| |||| |||||    
T  39414622 atgtagatcagattattaaaaatatcaacatcattaaactagat 39414665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 453 - 504
Target Start/End: Original strand, 39421698 - 39421749
Alignment:
Q  453 tcaataaaatagatgaatagcaacatttaccaaattctttttcctcatcaaa 504  Q
    |||||||| ||||||||||  ||||||||||| |||| ||||||||||||||    
T  39421698 tcaataaattagatgaataagaacatttaccagattcattttcctcatcaaa 39421749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 160
Target Start/End: Original strand, 39473136 - 39473191
Alignment:
Q  105 aattggtcatccatgttagatgtatctgcatatttagaaagcagatagtcaagctc 160  Q
    ||||| |||||||||| ||||||| ||||||||||||| |||||||| | ||||||    
T  39473136 aattgatcatccatgtaagatgtagctgcatatttagatagcagatatttaagctc 39473191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 39196762 - 39196812
Alignment:
Q  9 agtattatatccaaaacaagttttgctggatctgatgattctcgcaaatta 59  Q
    ||||| || |||||||||||||||| |||||||||||||||| ||| ||||    
T  39196762 agtatcatttccaaaacaagttttgatggatctgatgattcttgcagatta 39196812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 39223644 - 39223594
Alignment:
Q  9 agtattatatccaaaacaagttttgctggatctgatgattctcgcaaatta 59  Q
    ||||| || |||||||||||||||| |||||||||||||||| ||| ||||    
T  39223644 agtatcatttccaaaacaagttttgatggatctgatgattcttgcagatta 39223594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 81 - 151
Target Start/End: Original strand, 39387860 - 39387930
Alignment:
Q  81 cttgtgccatcaatggtaatactgaattggtcatccatgttagatgtatctgcatatttagaaagcagata 151  Q
    ||||| ||| ||||||||  ||| ||||| |||||||||| ||||  | ||||||||||||||||||||||    
T  39387860 cttgttccaccaatggtacgacttaattgatcatccatgtaagattcaactgcatatttagaaagcagata 39387930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 67
Target Start/End: Complemental strand, 39099516 - 39099459
Alignment:
Q  10 gtattatatccaaaacaagttttgctggatctgatgattctcgcaaattatctagaat 67  Q
    |||||||||||||||| | ||||| |||||||||| || || ||| ||||||||||||    
T  39099516 gtattatatccaaaacgacttttgatggatctgataatccttgcagattatctagaat 39099459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 47
Target Start/End: Complemental strand, 39144525 - 39144488
Alignment:
Q  10 gtattatatccaaaacaagttttgctggatctgatgat 47  Q
    |||||||||||||||||| ||||| |||||||||||||    
T  39144525 gtattatatccaaaacaacttttgatggatctgatgat 39144488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 39216586 - 39216537
Alignment:
Q  10 gtattatatccaaaacaagttttgctggatctgatgattctcgcaaatta 59  Q
    |||| ||||||||||||||| ||| |||||||||||| ||| ||||||||    
T  39216586 gtatcatatccaaaacaagtcttgatggatctgatgagtctagcaaatta 39216537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 556 - 605
Target Start/End: Complemental strand, 39468392 - 39468343
Alignment:
Q  556 ctttgactcaagatccttgatttgtacttcaatctgattctcttttaact 605  Q
    |||||||| ||| ||||||| |||| |||||||||| |||||||||||||    
T  39468392 ctttgactgaagttccttgacttgtccttcaatctgcttctcttttaact 39468343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 47
Target Start/End: Original strand, 39493692 - 39493729
Alignment:
Q  10 gtattatatccaaaacaagttttgctggatctgatgat 47  Q
    |||||||||||||||||| ||||| |||||||||||||    
T  39493692 gtattatatccaaaacaacttttgatggatctgatgat 39493729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 142
Target Start/End: Original strand, 44895473 - 44895510
Alignment:
Q  105 aattggtcatccatgttagatgtatctgcatatttaga 142  Q
    ||||| |||||||||||||||||| |||||||||||||    
T  44895473 aattgatcatccatgttagatgtaactgcatatttaga 44895510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 2e-45; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 453 - 610
Target Start/End: Complemental strand, 45342206 - 45342049
Alignment:
Q  453 tcaataaaatagatgaatagcaacatttaccaaattctttttcctcatcaaattgtttctctgtcagatcaagctcctttagttgtccaccaaaattatt 552  Q
    |||||||| |||||||||| |||  ||||||||||||||||||||||||  ||||||||| |||||  ||||||||||||| ||||||| | ||||||||    
T  45342206 tcaataaactagatgaataacaaattttaccaaattctttttcctcatcgtattgtttctttgtcaactcaagctcctttatttgtccatccaaattatt 45342107  T
Q  553 cagctttgactcaagatccttgatttgtacttcaatctgattctcttttaactcgagt 610  Q
    ||||||||||||||| ||||||||||| ||||||| ||||||||||||||||| ||||    
T  45342106 cagctttgactcaaggtccttgatttgcacttcaaactgattctcttttaactggagt 45342049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 87 - 288
Target Start/End: Complemental strand, 45342828 - 45342640
Alignment:
Q  87 ccatcaatggtaatactgaattggtcatccatgttagatgtatctgcatatttagaaagcagatagtcaagctctttgatcatatttacttaagcaacaa 186  Q
    |||||||||||| |||| ||||| |||||||||| ||||||  ||   |||||||| |||||||| | ||||||| |   ||||||||| |||| | |||    
T  45342828 ccatcaatggtagtacttaattgatcatccatgtaagatgtgactaagtatttagatagcagatatttaagctctct---catatttacataagaaccaa 45342732  T
Q  187 aaattgaaggtgacaaaaggaattaaaaaagatatatactatgaaagcatgtgagaaagaaaaacattatactaacagtttcaaagtcaatatagaacct 286  Q
     || | |||||||||| ||||||||||||| ||||||||| ||||||          || ||| ||||||||||||| || |||||||||||||||||||    
T  45342731 taaataaaggtgacaataggaattaaaaaatatatatactgtgaaag----------aggaaagcattatactaacaattacaaagtcaatatagaacct 45342642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 420 - 461
Target Start/End: Complemental strand, 45342271 - 45342230
Alignment:
Q  420 aatatgtagatcaggttattaaaaatatcaacatcaataaaa 461  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  45342271 aatatgtagatcaggttattaaaaatatcaacatcaacaaaa 45342230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 44950121 - 44950169
Alignment:
Q  9 agtattatatccaaaacaagttttgctggatctgatgattctcgcaaat 57  Q
    ||||||||||||||||||| ||| |||  ||||||||||||||||||||    
T  44950121 agtattatatccaaaacaattttcgctatatctgatgattctcgcaaat 44950169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 9e-38; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 11 - 215
Target Start/End: Complemental strand, 17060574 - 17060370
Alignment:
Q  11 tattatatccaaaacaagttttgctggatctgatgattctcgcaaattatctagaatgccaatttcctcgcttgtgccatcaatggtaatactgaattgg 110  Q
    ||||| ||||||||||| ||||| |||||| ||||||||| |||||||| |||||||| ||  |||||| ||||  ||||||||||||||||| ||||      
T  17060574 tattacatccaaaacaatttttgatggatccgatgattcttgcaaattaactagaatgtcagattcctcacttgctccatcaatggtaatacttaattca 17060475  T
Q  111 tcatccatgttagatgtatctgcatatttagaaagcagatagtcaagctctttgatcatatttacttaagcaacaaaaattgaaggtgacaaaaggaatt 210  Q
    |||||||||| ||||||||||||||||||||| |  ||||| | |||||||   ||||||||||| |||||||||| || ||| |||  ||| |||||||    
T  17060474 tcatccatgtaagatgtatctgcatatttagataaaagatacttaagctctcatatcatatttacataagcaacaataaatgagggtttcaataggaatt 17060375  T
Q  211 aaaaa 215  Q
    |||||    
T  17060374 aaaaa 17060370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 423 - 461
Target Start/End: Complemental strand, 17059694 - 17059656
Alignment:
Q  423 atgtagatcaggttattaaaaatatcaacatcaataaaa 461  Q
    |||||||||||| ||||||||||| ||||||||||||||    
T  17059694 atgtagatcaggatattaaaaatagcaacatcaataaaa 17059656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 33562219 - 33562169
Alignment:
Q  9 agtattatatccaaaacaagttttgctggatctgatgattctcgcaaatta 59  Q
    ||||| || |||||||||||||||| |||||||||||||||| ||| ||||    
T  33562219 agtatcatttccaaaacaagttttgatggatctgatgattcttgcagatta 33562169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 455 - 496
Target Start/End: Complemental strand, 17059630 - 17059589
Alignment:
Q  455 aataaaatagatgaatagcaacatttaccaaattctttttcc 496  Q
    |||||| |||||||||| ||||||||||||||||| ||||||    
T  17059630 aataaactagatgaataacaacatttaccaaattcattttcc 17059589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 525 - 605
Target Start/End: Complemental strand, 16113383 - 16113303
Alignment:
Q  525 gctcctttagttgtccaccaaaattattcagctttgactcaagatccttgatttgtacttcaatctgattctcttttaact 605  Q
    ||||||| |||||||| ||||| |  ||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||    
T  16113383 gctccttcagttgtccgccaaattcgttcagctttgactcaagctccttgacttgtacttcaatctgcttctcttttaact 16113303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 16114296 - 16114256
Alignment:
Q  10 gtattatatccaaaacaagttttgctggatctgatgattct 50  Q
    |||||||||||||||||||| ||| |||||||| |||||||    
T  16114296 gtattatatccaaaacaagtcttgatggatctgctgattct 16114256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 423 - 455
Target Start/End: Complemental strand, 19808059 - 19808027
Alignment:
Q  423 atgtagatcaggttattaaaaatatcaacatca 455  Q
    |||||||||||||||||||||||||||||||||    
T  19808059 atgtagatcaggttattaaaaatatcaacatca 19808027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 19808835 - 19808795
Alignment:
Q  10 gtattatatccaaaacaagttttgctggatctgatgattct 50  Q
    |||||||||||||||||| ||||| ||||||||||||||||    
T  19808835 gtattatatccaaaacaacttttgttggatctgatgattct 19808795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 500 - 578
Target Start/End: Complemental strand, 19807929 - 19807851
Alignment:
Q  500 tcaaattgtttctctgtcagatcaagctcctttagttgtccaccaaaattattcagctttgactcaagatccttgattt 578  Q
    |||||||||||||||||||  |||  |||||| | ||||||| |||| |||| |||||||||  || ||||||||||||    
T  19807929 tcaaattgtttctctgtcaactcagactccttcaattgtccatcaaatttatccagctttgaaccaggatccttgattt 19807851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University