View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1503R-Insertion-13 (Length: 753)

Name: NF1503R-Insertion-13
Description: NF1503R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1503R-Insertion-13
NF1503R-Insertion-13
[»] chr5 (29 HSPs)
chr5 (9-302)||(1945414-1945713)
chr5 (390-740)||(1944999-1945336)
chr5 (627-740)||(16855861-16855974)
chr5 (162-321)||(42885526-42885685)
chr5 (619-731)||(42885238-42885350)
chr5 (162-321)||(16666193-16666352)
chr5 (156-321)||(28247310-28247474)
chr5 (548-740)||(26502690-26502886)
chr5 (396-503)||(15921418-15921525)
chr5 (162-302)||(16855431-16855571)
chr5 (611-740)||(15921175-15921304)
chr5 (160-263)||(15921619-15921722)
chr5 (390-511)||(28247120-28247238)
chr5 (165-267)||(32903416-32903518)
chr5 (645-740)||(32903910-32904005)
chr5 (614-740)||(28246892-28247008)
chr5 (167-321)||(1864890-1865044)
chr5 (613-731)||(16666490-16666592)
chr5 (390-469)||(1864767-1864846)
chr5 (390-469)||(35505908-35505985)
chr5 (618-672)||(1864591-1864645)
chr5 (397-511)||(32903615-32903728)
chr5 (390-469)||(42885375-42885450)
chr5 (391-464)||(28084449-28084521)
chr5 (683-740)||(1863933-1863990)
chr5 (419-511)||(16855663-16855755)
chr5 (398-463)||(29369607-29369671)
chr5 (425-463)||(26503002-26503040)
chr5 (199-312)||(26503118-26503231)
[»] chr6 (11 HSPs)
chr6 (390-740)||(32923028-32923374)
chr6 (390-503)||(4334009-4334119)
chr6 (161-267)||(32923459-32923565)
chr6 (162-302)||(4334201-4334340)
chr6 (646-731)||(28590067-28590152)
chr6 (162-235)||(28590514-28590587)
chr6 (637-740)||(9578577-9578680)
chr6 (160-263)||(10972540-10972643)
chr6 (611-669)||(4333635-4333693)
chr6 (611-669)||(4333839-4333897)
chr6 (411-469)||(10972771-10972829)
[»] chr7 (36 HSPs)
chr7 (390-730)||(778456-778786)
chr7 (613-731)||(31589880-31589998)
chr7 (613-731)||(35445326-35445444)
chr7 (162-321)||(35444715-35444874)
chr7 (613-740)||(43127288-43127415)
chr7 (159-321)||(38032474-38032636)
chr7 (546-731)||(21859119-21859307)
chr7 (162-295)||(21237051-21237184)
chr7 (192-321)||(31590257-31590386)
chr7 (611-740)||(2619701-2619833)
chr7 (618-731)||(38032021-38032134)
chr7 (390-463)||(2455820-2455893)
chr7 (390-497)||(21859358-21859462)
chr7 (390-469)||(45688596-45688675)
chr7 (618-740)||(45885069-45885191)
chr7 (162-302)||(21859539-21859679)
chr7 (162-242)||(30604233-30604313)
chr7 (674-740)||(21236633-21236699)
chr7 (162-267)||(43126863-43126968)
chr7 (219-319)||(2455967-2456067)
chr7 (632-733)||(45689120-45689224)
chr7 (390-469)||(35444950-35445025)
chr7 (162-239)||(38026388-38026465)
chr7 (162-234)||(2243178-2243250)
chr7 (401-461)||(47129811-47129870)
chr7 (408-503)||(21236861-21236954)
chr7 (219-302)||(45885542-45885624)
chr7 (683-729)||(2455594-2455640)
chr7 (390-469)||(31590106-31590181)
chr7 (163-317)||(45688365-45688518)
chr7 (162-231)||(784000-784069)
chr7 (618-669)||(2455638-2455689)
chr7 (413-460)||(43127087-43127134)
chr7 (390-429)||(45885420-45885459)
chr7 (272-321)||(778859-778908)
chr7 (163-240)||(7845480-7845557)
[»] chr4 (43 HSPs)
chr4 (613-731)||(221170-221288)
chr4 (162-321)||(44820310-44820469)
chr4 (162-321)||(29285174-29285333)
chr4 (613-731)||(5486538-5486656)
chr4 (613-731)||(29284836-29284954)
chr4 (613-731)||(44820728-44820846)
chr4 (161-318)||(5486949-5487106)
chr4 (160-321)||(46395186-46395347)
chr4 (611-731)||(34442175-34442295)
chr4 (611-740)||(27871728-27871857)
chr4 (390-511)||(1143299-1143419)
chr4 (546-740)||(1143064-1143261)
chr4 (162-294)||(46251380-46251512)
chr4 (613-740)||(46394755-46394882)
chr4 (163-321)||(18903212-18903371)
chr4 (162-302)||(221558-221697)
chr4 (390-511)||(52597025-52597149)
chr4 (162-318)||(55710043-55710199)
chr4 (613-717)||(55710511-55710615)
chr4 (390-464)||(46395042-46395116)
chr4 (390-469)||(18906376-18906455)
chr4 (390-461)||(18903068-18903138)
chr4 (390-469)||(5486795-5486870)
chr4 (390-469)||(44820545-44820620)
chr4 (193-302)||(1143491-1143600)
chr4 (396-469)||(29285023-29285092)
chr4 (162-242)||(42595806-42595886)
chr4 (397-440)||(27871999-27872042)
chr4 (390-457)||(51970494-51970560)
chr4 (219-302)||(52597221-52597304)
chr4 (630-740)||(18902620-18902730)
chr4 (165-263)||(18906156-18906254)
chr4 (164-234)||(51970711-51970781)
chr4 (674-740)||(52596805-52596871)
chr4 (162-231)||(15731368-15731437)
chr4 (626-699)||(42432720-42432793)
chr4 (162-231)||(42433538-42433607)
chr4 (686-730)||(18906566-18906610)
chr4 (628-740)||(49408420-49408532)
chr4 (546-596)||(221311-221361)
chr4 (546-596)||(46394911-46394961)
chr4 (611-669)||(52596860-52596918)
chr4 (687-735)||(56543888-56543937)
[»] scaffold0057 (1 HSPs)
scaffold0057 (611-740)||(49954-50083)
[»] chr2 (15 HSPs)
chr2 (611-731)||(12698663-12698782)
chr2 (613-731)||(15696801-15696919)
chr2 (546-740)||(17841470-17841673)
chr2 (546-733)||(15676095-15676285)
chr2 (611-730)||(4622448-4622567)
chr2 (166-302)||(4622864-4623000)
chr2 (390-502)||(17841719-17841830)
chr2 (164-318)||(17841905-17842059)
chr2 (618-694)||(30953891-30953967)
chr2 (192-298)||(15675744-15675850)
chr2 (162-240)||(12438455-12438533)
chr2 (390-435)||(12698958-12699003)
chr2 (390-435)||(30954030-30954075)
chr2 (390-480)||(4622693-4622782)
chr2 (283-321)||(12699082-12699120)
[»] chr3 (38 HSPs)
chr3 (613-731)||(24735824-24735942)
chr3 (613-731)||(29839766-29839884)
chr3 (611-738)||(26042018-26042145)
chr3 (630-740)||(44791422-44791532)
chr3 (611-740)||(3857998-3858127)
chr3 (161-302)||(3858435-3858576)
chr3 (160-321)||(29839196-29839357)
chr3 (390-511)||(44791143-44791263)
chr3 (162-321)||(24735414-24735573)
chr3 (161-321)||(44790915-44791075)
chr3 (393-497)||(29808261-29808364)
chr3 (162-302)||(29808439-29808579)
chr3 (390-503)||(3858240-3858352)
chr3 (390-458)||(23209893-23209960)
chr3 (674-740)||(29808024-29808090)
chr3 (396-469)||(34296705-34296777)
chr3 (390-461)||(12277282-12277352)
chr3 (390-469)||(24735649-24735724)
chr3 (390-469)||(29839433-29839508)
chr3 (173-267)||(34296896-34296990)
chr3 (162-231)||(6418727-6418796)
chr3 (162-234)||(42875893-42875965)
chr3 (627-731)||(52689604-52689708)
chr3 (397-460)||(26041805-26041868)
chr3 (159-242)||(37826881-37826964)
chr3 (398-463)||(21983251-21983315)
chr3 (408-469)||(42875722-42875783)
chr3 (390-469)||(36544307-36544385)
chr3 (390-469)||(36563939-36564017)
chr3 (626-740)||(17612652-17612766)
chr3 (683-724)||(24435270-24435311)
chr3 (162-231)||(26897979-26898048)
chr3 (625-665)||(23217137-23217177)
chr3 (162-265)||(52688937-52689040)
chr3 (611-653)||(29808095-29808137)
chr3 (618-671)||(1659754-1659807)
chr3 (626-659)||(6419369-6419402)
chr3 (628-673)||(26897290-26897335)
[»] chr1 (26 HSPs)
chr1 (613-731)||(29267885-29268003)
chr1 (613-740)||(3302998-3303125)
chr1 (611-731)||(16543633-16543753)
chr1 (611-731)||(17145093-17145213)
chr1 (390-511)||(16543860-16543980)
chr1 (390-503)||(51004127-51004239)
chr1 (162-321)||(16544054-16544213)
chr1 (162-263)||(12417450-12417551)
chr1 (390-464)||(3303314-3303388)
chr1 (627-731)||(12416968-12417071)
chr1 (167-302)||(17145440-17145575)
chr1 (223-321)||(3303456-3303554)
chr1 (396-469)||(29268306-29268375)
chr1 (160-252)||(49382874-49382966)
chr1 (674-730)||(51003943-51003999)
chr1 (401-464)||(12417252-12417315)
chr1 (398-461)||(24536028-24536090)
chr1 (628-731)||(29171863-29171964)
chr1 (188-300)||(23296792-23296905)
chr1 (222-302)||(51004312-51004392)
chr1 (404-454)||(29171619-29171669)
chr1 (222-267)||(10193266-10193311)
chr1 (625-669)||(17586143-17586187)
chr1 (166-254)||(29268497-29268585)
chr1 (156-242)||(44344729-44344815)
chr1 (165-242)||(18523928-18524004)
[»] chr8 (22 HSPs)
chr8 (613-731)||(33359412-33359530)
chr8 (162-321)||(41288116-41288275)
chr8 (611-733)||(6801431-6801553)
chr8 (390-503)||(6801215-6801327)
chr8 (404-503)||(41137752-41137850)
chr8 (390-480)||(33359188-33359278)
chr8 (166-302)||(17071661-17071797)
chr8 (166-302)||(17576476-17576612)
chr8 (390-469)||(17071501-17071580)
chr8 (390-469)||(17576692-17576771)
chr8 (162-266)||(6801002-6801106)
chr8 (613-740)||(17071180-17071297)
chr8 (613-740)||(17576975-17577092)
chr8 (613-731)||(41287605-41287707)
chr8 (162-302)||(33358967-33359106)
chr8 (178-266)||(34699733-34699821)
chr8 (390-469)||(41287965-41288040)
chr8 (183-302)||(41137555-41137673)
chr8 (160-240)||(16028219-16028300)
chr8 (390-462)||(45454209-45454281)
chr8 (611-669)||(41137962-41138020)
chr8 (162-239)||(43953587-43953664)
[»] scaffold0023 (1 HSPs)
scaffold0023 (390-463)||(113214-113287)


Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-125; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 9 - 302
Target Start/End: Complemental strand, 1945713 - 1945414
Alignment:
Q  9 aattactactttcacttgttatatgaacagttgtaaaaaa-tgtgtacttgagcatgtgaatttgctttgcatgaagaaaacattaaatg-----tactt 102  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||     |||||    
T  1945713 aattactactttcacttgttatatgaacagttgtaaaaaaatgtgtacttgagcatgtgaatttgctttgcatgaagaaaacatcaaatgaactatactt 1945614  T
Q  103 tgatcttcttttcttttttgacaaacaaaaattaatatgtataaatatacccacacgagtagggatgtcaatgggtacccatggatacagatagtatgat 202  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  1945613 tgatcttcttttcttttttgacaaacaaaaattaatatgtatgaatatacccacacgagtagggatgtcaatgagtacccatgggtacagatagtatgat 1945514  T
Q  203 actcgtccccgccacattggataaatatgatacccgtgcctgcctcgtaccctcgtgggtacccatcatgtggatacccgtgggtattgaggtatccatg 302  Q
    ||||||| |||||||||||||||||||||||||||||| |  |||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||    
T  1945513 actcgtctccgccacattggataaatatgatacccgtgtccacctcgtaccctcttgggtacccatcatgtggatacccgtgggtattaaggtattcatg 1945414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 390 - 740
Target Start/End: Complemental strand, 1945336 - 1944999
Alignment:
Q  390 aacattcatacataatccattcaaaatttcataaatcatatataattcatagaaaattcatgattcttacataatgcataacatatgtttttaggatgtg 489  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||           |||||||||||||| ||||||||||||||||| ||||||    
T  1945336 aacattcatacataatccattcaaaatttcataaatcatacataattcat-----------gattcttacataatacataacatatgtttttatgatgtg 1945248  T
Q  490 aatgaagtagaaacagtaaactaataaataagatgaattnnnnnnnnnnnnnnnnnggttattaatgaggaatcttagatgggcaggaaaatttctttca 589  Q
    |||||||||||||| |||||||||   ||||||||||||                 ||||||||||||||||||||||||||||||||||||||||||||    
T  1945247 aatgaagtagaaacggtaaactaa---ataagatgaattaaaaaaaaaaaaaaaaaggttattaatgaggaatcttagatgggcaggaaaatttctttca 1945151  T
Q  590 ataaggttatcaattgggatgagataagatatatcaggatattttagtaatatacttaatttattattgggtatgggta-cccgtgggtatgaatacaat 688  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||    
T  1945150 ataaggttatcaattgggatgagataagatatataaggatattttagtaatatacttaatttattattgggtatgggtatcccgtggatatggatacaat 1945051  T
Q  689 caaatccgtgtccgtatccatataataatgggtagtcaaatactcatttatt 740  Q
     ||||||||||||||||||||||||||||  || ||||||||| ||||||||    
T  1945050 taaatccgtgtccgtatccatataataatatgtggtcaaatacccatttatt 1944999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 627 - 740
Target Start/End: Original strand, 16855861 - 16855974
Alignment:
Q  627 gatattttagtaatatacttaatttattattgggtatgggtacccgtgggtatgaatacaatcaaatccgtgtccgtatccatataataatgggtagtca 726  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  16855861 gatattttagtaatttacttaatttattatcgggtatgggtacccgtaggtatgaatacaatcaaatccgtgtccatatccatataataatggatagtca 16855960  T
Q  727 aatactcatttatt 740  Q
    ||||| | ||||||    
T  16855961 aatacccgtttatt 16855974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 162 - 321
Target Start/End: Complemental strand, 42885685 - 42885526
Alignment:
Q  162 tagggatgtcaatgggtacccatggatacagatagtatgatactcgtccccgccacattggataaatatgatacccgtgcctgcctcgtaccctcgtggg 261  Q
    ||||||||||||||| |||||||||| || ||||||||||||| ||| |||||| | ||||||||| ||||||||| ||||  || ||||||| | ||||    
T  42885685 tagggatgtcaatggatacccatggacacggatagtatgatacccgtgcccgccccgttggataaacatgatacccatgcccaccccgtacccacatggg 42885586  T
Q  262 tacccatcatgtggatacccgtgggtattgaggtatccatgtgtattcatgggtacccat 321  Q
    ||||||| |||||| |||||||||||||||| ||||||||| |||||| |||||||||||    
T  42885585 tacccattatgtgggtacccgtgggtattgaagtatccatgggtattcgtgggtacccat 42885526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 619 - 731
Target Start/End: Complemental strand, 42885350 - 42885238
Alignment:
Q  619 tatatcaggatattttagtaatatacttaatttattattgggtatgggtacccgtgggtatgaatacaatcaaatccgtgtccgtatccatataataatg 718  Q
    ||||| ||||||||||||||||  | ||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||| ||| ||||||||||||    
T  42885350 tatataaggatattttagtaattaagttaatttattattgggtatgggtacccgtgggtatgggtaccatcaaatccgtgtccatattcatataataatg 42885251  T
Q  719 ggtagtcaaatac 731  Q
    |||||||||||||    
T  42885250 ggtagtcaaatac 42885238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 162 - 321
Target Start/End: Original strand, 16666193 - 16666352
Alignment:
Q  162 tagggatgtcaatgggtacccatggatacagatagtatgatactcgtccccgccacattggataaatatgatacccgtgcctgcctcgtaccctcgtggg 261  Q
    ||||||||||||||| |||||||||| || ||||||||||||||||| |||||  | ||||||||| ||||||||| |||| |||  |||||| | ||||    
T  16666193 tagggatgtcaatggatacccatggacacggatagtatgatactcgtgcccgctccgttggataaacatgatacccatgcccgccctgtacccacatggg 16666292  T
Q  262 tacccatcatgtggatacccgtgggtattgaggtatccatgtgtattcatgggtacccat 321  Q
    ||||||| || ||| ||||| |||||||||| ||||||||| |||||| |||||||||||    
T  16666293 tacccattatatgggtacccatgggtattgaagtatccatgggtattcgtgggtacccat 16666352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 156 - 321
Target Start/End: Complemental strand, 28247474 - 28247310
Alignment:
Q  156 cacgagtagggatgtcaatgggtacccatggatacagatagtatgatactcgtccccgccacattggataaatatgatacccgtgcctgcctcgtaccct 255  Q
    ||||| ||||||||||||||||||| ||||| ||| |||| ||||||||||||||||| | | | |||||||||||||| | | ||| ||||||||||||    
T  28247474 cacgaatagggatgtcaatgggtactcatgggtacggataatatgatactcgtccccgtcccgt-ggataaatatgatatctgcgcccgcctcgtaccct 28247376  T
Q  256 cgtgggtacccatcatgtggatacccgtgggtattgaggtatccatgtgtattcatgggtacccat 321  Q
    |||||||| |||  ||| || || || |||||||||||||||| ||| |||||||| |||||||||    
T  28247375 cgtgggtatccactatgcgggtatccatgggtattgaggtatctatgggtattcataggtacccat 28247310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 548 - 740
Target Start/End: Complemental strand, 26502886 - 26502690
Alignment:
Q  548 ttattaatgaggaatcttagatgggcaggaaaatttctttcaataaggttatcaatt---gggatgagataagatatatcaggatattttagtaatatac 644  Q
    |||||||||||||||||||| ||||  | |||||||| ||||||||||| |  | ||   |  || ||||||||||||| || ||||||||||||| ||     
T  26502886 ttattaatgaggaatcttaggtggggggtaaaatttccttcaataaggtaacaactttaagtaataagataagatatataagaatattttagtaatttag 26502787  T
Q  645 ttaatttattattgggtatgggtacccgtgggtatgaatacaatcaaatccgtgtcc--gtatccatataataatgggtagtcaaatactcatttatt 740  Q
    |||||||| ||| ||||||||||||||||||| |||| ||||||||||| |||||||   |||||||||| |||||||||||||||||| | ||||||    
T  26502786 ttaatttaatatcgggtatgggtacccgtggg-atgagtacaatcaaattcgtgtccatatatccatatactaatgggtagtcaaatacccgtttatt 26502690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 396 - 503
Target Start/End: Complemental strand, 15921525 - 15921418
Alignment:
Q  396 catacataatccattcaaaatttcataaatcatatataattc-atagaaaattcatgattcttacataatgcataacatatgtttttaggatgtgaatga 494  Q
    ||||||||||| |||||||||||||||||||||| |||| || ||||||||||||||||||||||||||| ||||  ||||||||||  |||||||||||    
T  15921525 catacataatctattcaaaatttcataaatcatacataaatccatagaaaattcatgattcttacataatccatatgatatgttttt-tgatgtgaatga 15921427  T
Q  495 agtagaaac 503  Q
    |||||||||    
T  15921426 agtagaaac 15921418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 162 - 302
Target Start/End: Original strand, 16855431 - 16855571
Alignment:
Q  162 tagggatgtcaatgggtacccatggatacagatagtatgatactcgtccccgccacattggataaatatgatacccgtgcctgcctcgtaccctcgtggg 261  Q
    ||||||| |||||||||||||||   ||||||||||||||||| |||| ||||| | ||||||||| ||||||| ||||||  || ||||| ||||||||    
T  16855431 tagggatatcaatgggtacccataagtacagatagtatgatacgcgtctccgccccgttggataaaaatgatactcgtgcccaccccgtactctcgtggg 16855530  T
Q  262 tacccatcatgtggatacccgtgggtattgaggtatccatg 302  Q
    ||||||  ||| || |||||| |||||||||||||| ||||    
T  16855531 tacccactatgcgggtacccgcgggtattgaggtattcatg 16855571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 611 - 740
Target Start/End: Complemental strand, 15921304 - 15921175
Alignment:
Q  611 agataagatatatcaggatattttagtaatatacttaatttattattgggtatgggtacccgtgggtatgaatacaatcaaatccgtgtccgtatccata 710  Q
    ||||||||||||| ||  ||||||| |||| ||||||||||||||| ||||||| |||| | ||| ||||| ||||||||||||  ||||||||| ||||    
T  15921304 agataagatatataagattattttaataatttacttaatttattatagggtatgtgtacacatggatatgagtacaatcaaatctatgtccgtattcata 15921205  T
Q  711 taataatgggtagtcaaatactcatttatt 740  Q
    |||||||  |||||||||||| | ||||||    
T  15921204 taataatatgtagtcaaatacccgtttatt 15921175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 160 - 263
Target Start/End: Complemental strand, 15921722 - 15921619
Alignment:
Q  160 agtagggatgtcaatgggtacccatggatacagatagtatgatactcgtccccgccacattggataaatatgatacccgtgcctgcctcgtaccctcgtg 259  Q
    ||||||||||||||||||||||||||| ||| |||| |||||||| ||| |||||| | ||||||||||||||||| |||| | |||||||| |||| ||    
T  15921722 agtagggatgtcaatgggtacccatgggtacggataatatgatacccgttcccgccccgttggataaatatgatactcgtgtccgcctcgtatcctcatg 15921623  T
Q  260 ggta 263  Q
    ||||    
T  15921622 ggta 15921619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 390 - 511
Target Start/End: Complemental strand, 28247238 - 28247120
Alignment:
Q  390 aacattcatacataatccattcaaaatttcataaatcatatataattcatagaaaattcatgattcttacataatgcataacatatgtttttaggatgtg 489  Q
    |||||||||| ||||||||||| ||||||||||||||||| ||||| |||||||||||||||||| |||||| ||  | ||  |||||||| | ||||||    
T  28247238 aacattcatatataatccattccaaatttcataaatcatacataatccatagaaaattcatgatttttacattatttagaa--tatgtttt-atgatgtg 28247142  T
Q  490 aatgaagtagaaacagtaaact 511  Q
    |||||||||||||| || ||||    
T  28247141 aatgaagtagaaacggtgaact 28247120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 165 - 267
Target Start/End: Original strand, 32903416 - 32903518
Alignment:
Q  165 ggatgtcaatgggtacccatggatacagatagtatgatactcgtccccgccacattggataaatatgatacccgtgcctgcctcgtaccctcgtgggtac 264  Q
    |||||||||||||||||||||||||| ||||||||||||   || |||||| | |||||||||||||||||||||||| | | |||| |||| |||||||    
T  32903416 ggatgtcaatgggtacccatggatacggatagtatgatatctgttcccgccccgttggataaatatgatacccgtgcccgtcccgtatcctcttgggtac 32903515  T
Q  265 cca 267  Q
    |||    
T  32903516 cca 32903518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 645 - 740
Target Start/End: Original strand, 32903910 - 32904005
Alignment:
Q  645 ttaatttattattgggtatgggtacccgtgggtatgaatacaatcaaatccgtgtccgtatccatataataatgggtagtcaaatactcatttatt 740  Q
    ||||||||||||  |||||| |||||  ||| |||| ||||||||||||||||||||||||||||||||| |||||||||| ||||| | ||||||    
T  32903910 ttaatttattatcaggtatgagtacctatggatatggatacaatcaaatccgtgtccgtatccatataatgatgggtagtcgaatacccgtttatt 32904005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 614 - 740
Target Start/End: Complemental strand, 28247008 - 28246892
Alignment:
Q  614 taagatatatcaggatattttagtaatatacttaatttattattgggtatgggtacccgtgggtatgaatacaatcaaatccgtgtccgtatccatataa 713  Q
    |||||||||| | ||| ||||||| || |||||||||||| ||||||||||          |||||| ||||||||||||| ||||||||||| ||||||    
T  28247008 taagatatataaagatgttttagtcatttacttaatttatcattgggtatg----------ggtatggatacaatcaaatctgtgtccgtatctatataa 28246919  T
Q  714 taatgggtagtcaaatactcatttatt 740  Q
    |||||||||||||||||| | ||||||    
T  28246918 taatgggtagtcaaatacccgtttatt 28246892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 167 - 321
Target Start/End: Complemental strand, 1865044 - 1864890
Alignment:
Q  167 atgtcaatgggtacccatggatacagatagtatgatactcgtccccgccacattggataaatatgatacccgtgcctgcctcgtaccctcgtgggtaccc 266  Q
    ||||| |||| |||| |||| |||  ||||||| |||||||||||| |  | |||||||||| ||||| ||||| | ||||| ||||||| || |||| |    
T  1865044 atgtcgatggatacctatgggtacgaatagtatcatactcgtccccactccgttggataaatgtgatatccgtgtccgcctcataccctcatgtgtactc 1864945  T
Q  267 atcatgtggatacccgtgggtattgaggtatccatgtgtattcatgggtacccat 321  Q
    || ||  || |||||||||||||| |||||||||||  || ||||||||||||||    
T  1864944 attattcgggtacccgtgggtattaaggtatccatgaatactcatgggtacccat 1864890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 613 - 731
Target Start/End: Original strand, 16666490 - 16666592
Alignment:
Q  613 ataagatatatcaggatattttagtaatatacttaatttattattgggtatgggtacccgtgggtatgaatacaatcaaatccgtgtccgtatccatata 712  Q
    ||||||||||| ||||||||||||||||  | ||||||||||||||||||||||||||                ||||||||||||||||||| ||||||    
T  16666490 ataagatatataaggatattttagtaattaagttaatttattattgggtatgggtacc----------------atcaaatccgtgtccgtattcatata 16666573  T
Q  713 ataatgggtagtcaaatac 731  Q
    |||||||||||||||||||    
T  16666574 ataatgggtagtcaaatac 16666592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 390 - 469
Target Start/End: Complemental strand, 1864846 - 1864767
Alignment:
Q  390 aacattcatacataatccattcaaaatttcataaatcatatataattcatagaaaattcatgattcttacataatgcata 469  Q
    ||||| |||| |||||||||||||||||||||  |||||| | ||| ||||||||| |||||||||||||||||| ||||    
T  1864846 aacatccatatataatccattcaaaatttcattgatcatacaaaatccatagaaaaatcatgattcttacataatccata 1864767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 390 - 469
Target Start/End: Original strand, 35505908 - 35505985
Alignment:
Q  390 aacattcatacataatccattcaaaatttcataaatcatatataattcatagaaaattcatgattcttacataatgcata 469  Q
    |||||||||||||||| |||||||| |||||||||||||||||||| ||||  ||||||||||||||| |||||| ||||    
T  35505908 aacattcatacataattcattcaaa-tttcataaatcatatataatccata-caaattcatgattcttgcataatccata 35505985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 618 - 672
Target Start/End: Complemental strand, 1864645 - 1864591
Alignment:
Q  618 atatatcaggatattttagtaatatacttaatttattattgggtatgggtacccg 672  Q
    |||||| |||||||||||||||| ||||||||||||||| |||||||||||||||    
T  1864645 atatataaggatattttagtaatttacttaatttattatcgggtatgggtacccg 1864591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 397 - 511
Target Start/End: Original strand, 32903615 - 32903728
Alignment:
Q  397 atacataatccattcaaaatttcataaatcatatataattcatagaaaattcatgattcttacataatgcataacatatgtttttaggatgtgaatgaag 496  Q
    ||||||||||||||   |||||||||||| | | |||||  ||||||||||||||||||||||||||| ||||   |||| ||| | |||||||||||||    
T  32903615 atacataatccattaggaatttcataaataacacataatcaatagaaaattcatgattcttacataatacataggttatg-tttcatgatgtgaatgaag 32903713  T
Q  497 tagaaacagtaaact 511  Q
    | ||||| |||||||    
T  32903714 tggaaacggtaaact 32903728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 390 - 469
Target Start/End: Complemental strand, 42885450 - 42885375
Alignment:
Q  390 aacattcatacataatccattcaaaatttcataaatcatatataattcatagaaaattcatgattcttacataatgcata 469  Q
    ||||| ||||||||||| |||||||||||||||||||    ||||| |||||||||||||| ||||||||||||| ||||    
T  42885450 aacatccatacataatctattcaaaatttcataaatc----ataatccatagaaaattcataattcttacataattcata 42885375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 391 - 464
Target Start/End: Original strand, 28084449 - 28084521
Alignment:
Q  391 acattcatacataatccattcaaaatttcataaatcatatataattcatagaaaattcatgattcttacataat 464  Q
    |||| |||||||||| |||||||| |||||||||||||| ||||| |||| |||||| ||||||||||||||||    
T  28084449 acatccatacataattcattcaaa-tttcataaatcatacataatccatacaaaatttatgattcttacataat 28084521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 683 - 740
Target Start/End: Complemental strand, 1863990 - 1863933
Alignment:
Q  683 tacaatcaaatccgtgtccgtatccatataataatgggtagtcaaatactcatttatt 740  Q
    ||||||||||| ||||| ||||||||||||||||||| |||| |||||| ||||||||    
T  1863990 tacaatcaaattcgtgttcgtatccatataataatggatagttaaatacccatttatt 1863933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 419 - 511
Target Start/End: Original strand, 16855663 - 16855755
Alignment:
Q  419 cataaatcatatataattcatagaaaa-ttcatgattcttacataatgcataacatatgtttttaggatgtgaatgaagtagaaacagtaaact 511  Q
    ||||||||||| ||||| ||||||||| ||||||||||||| ||||| ||||  ||||| ||||| ||||||||||||||  ||||||| ||||    
T  16855663 cataaatcatacataatccatagaaaaattcatgattcttatataatccataggatatg-ttttatgatgtgaatgaagtgaaaacagtgaact 16855755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 398 - 463
Target Start/End: Original strand, 29369607 - 29369671
Alignment:
Q  398 tacataatccattcaaaatttcataaatcatatataattcatagaaaattcatgattcttacataa 463  Q
    ||||||||| ||||||| ||||||||||||||| |||| |||| ||||||||||||||||| ||||    
T  29369607 tacataatctattcaaa-tttcataaatcatatctaatccatacaaaattcatgattcttatataa 29369671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 425 - 463
Target Start/End: Complemental strand, 26503040 - 26503002
Alignment:
Q  425 tcatatataattcatagaaaattcatgattcttacataa 463  Q
    ||||| ||||| |||||||||||||||||||||||||||    
T  26503040 tcatacataatccatagaaaattcatgattcttacataa 26503002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 312
Target Start/End: Complemental strand, 26503231 - 26503118
Alignment:
Q  199 tgatactcgtccccgccacattggataaatatgatacccgtgcctgcctcgtaccctcgtgggtacccatcatgtggatacccgtgggtattgaggtatc 298  Q
    |||||| |||||| ||| | |||||||||||||||||||||  |  || | |||||||||| ||| |||  ||| || |||||| || |||||| |||||    
T  26503231 tgatacccgtccctgccccgttggataaatatgatacccgtatccaccccttaccctcgtgcgtatccactatgcgggtacccgcggatattgaagtatc 26503132  T
Q  299 catgtgtattcatg 312  Q
    |||| ||| |||||    
T  26503131 catgggtactcatg 26503118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 108; Significance: 8e-54; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 390 - 740
Target Start/End: Complemental strand, 32923374 - 32923028
Alignment:
Q  390 aacattcatacataatccattcaaaatttcataaatcatatataattcatagaaaattcatgattcttacataatgcataacatatgtttttaggatgtg 489  Q
    ||||| |||||||||||| ||||||||||||||||||||| ||||| ||||||||||| || ||||||||||||| ||||| || |||||| | |||||     
T  32923374 aacatccatacataatccgttcaaaatttcataaatcatacataatccatagaaaatt-attattcttacataatccataagatgtgtttt-atgatgta 32923277  T
Q  490 aatgaagtagaaacagtaaactaataaataagatgaattnnnnnnnnnnnnnnnnnggttattaatgaggaatcttagatgggcaggaaaatttctttca 589  Q
    |||||||| |||||| | |||| |   |||||||||||                  |||||||||||||||| ||||||||| | | |||||||| ||||    
T  32923276 aatgaagtggaaacaatgaactta---ataagatgaat--caaaaaaataaaaataggttattaatgaggaaccttagatggacggtaaaatttccttca 32923182  T
Q  590 ataaggttatcaa--ttggg--atgagataagatatatcaggatattttagtaatatacttaatttattattgggtatgggtacccgtgggtatgaatac 685  Q
    ||||||  | |||  || ||  || ||||||||||||| |||||||||||||||| || ||||||||||||||||| |||||||||||||||||| | ||    
T  32923181 ataagggaa-caactttaggtaataagataagatatataaggatattttagtaatttagttaatttattattgggtgtgggtacccgtgggtatggacac 32923083  T
Q  686 aatcaaatccgtgtccgtatccatataataatgggtagtcaaatactcatttatt 740  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| | ||||||    
T  32923082 aatcaaatccgtgtctgtatccatataataatgggtagtcaaatacccgtttatt 32923028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 390 - 503
Target Start/End: Complemental strand, 4334119 - 4334009
Alignment:
Q  390 aacattcatacataatccattcaaaatttcataaatcatatataattcatagaaaattcatgattcttacataatgcataacatatgtttttaggatgtg 489  Q
    ||||||||||||  ||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||  ||||| ||||| ||||||    
T  4334119 aacattcataca--atctattcaaaatttcgtaaatcataaataattcatagaaaattcatgattcttacataatccatagaatatg-ttttatgatgtg 4334023  T
Q  490 aatgaagtagaaac 503  Q
    |||||||| |||||    
T  4334022 aatgaagtggaaac 4334009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 161 - 267
Target Start/End: Complemental strand, 32923565 - 32923459
Alignment:
Q  161 gtagggatgtcaatgggtacccatggatacagatagtatgatactcgtccccgccacattggataaatatgatacccgtgcctgcctcgtaccctcgtgg 260  Q
    |||||||||||||||||||||||||| |||||||||||| ||||  | ||||| | | |||||||||||||||||||||||| ||| ||||||||||||     
T  32923565 gtagggatgtcaatgggtacccatgggtacagatagtataataccggcccccgtcccgttggataaatatgatacccgtgcccgccccgtaccctcgtgt 32923466  T
Q  261 gtaccca 267  Q
    |||||||    
T  32923465 gtaccca 32923459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 162 - 302
Target Start/End: Complemental strand, 4334340 - 4334201
Alignment:
Q  162 tagggatgtcaatgggtacccatggatacagatagtatgatactcgtccccgccacattggataaatatgatacccgtgcctgcctcgtaccctcgtggg 261  Q
    ||||||||||||||| |||||||| |||| |||||| ||||||||||| |||||   ||||||||||||||||   ||| | ||| | ||||||||||||    
T  4334340 tagggatgtcaatgg-tacccatgaatacggatagtgtgatactcgtctccgccctgttggataaatatgatattggtgtccgccccataccctcgtggg 4334242  T
Q  262 tacccatcatgtggatacccgtgggtattgaggtatccatg 302  Q
    ||||||  |||  ||||||||| | ||||||||||||||||    
T  4334241 tacccactatgcagatacccgtagatattgaggtatccatg 4334201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 646 - 731
Target Start/End: Complemental strand, 28590152 - 28590067
Alignment:
Q  646 taatttattattgggtatgggtacccgtgggtatgaatacaatcaaatccgtgtccgtatccatataataatgggtagtcaaatac 731  Q
    ||||||||||| | |||||| ||| |||||||||| |||| ||||||| |||||| ||||||||||||||||| ||||||||||||    
T  28590152 taatttattatcgagtatggatactcgtgggtatggatactatcaaattcgtgtctgtatccatataataatgagtagtcaaatac 28590067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 162 - 235
Target Start/End: Complemental strand, 28590587 - 28590514
Alignment:
Q  162 tagggatgtcaatgggtacccatggatacagatagtatgatactcgtccccgccacattggataaatatgatac 235  Q
    ||||||||||||||||||||||||| ||| |||| |||||||  ||||||||||  ||||||||||||||||||    
T  28590587 tagggatgtcaatgggtacccatgggtacggataatatgatatacgtccccgccctattggataaatatgatac 28590514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 637 - 740
Target Start/End: Complemental strand, 9578680 - 9578577
Alignment:
Q  637 taatatacttaatttattattgggtatgggtacccgtgggtatgaatacaatcaaatccgtgtccgtatccatataataatgggtagtcaaatactcatt 736  Q
    |||| ||||||||||||||| |||||||||||| | |||| | || ||  ||||||| ||||||| |||||||| |||||||||||||||| ||| | ||    
T  9578680 taatttacttaatttattatcgggtatgggtacacatgggcacgagtatcatcaaattcgtgtccatatccataaaataatgggtagtcaactacccgtt 9578581  T
Q  737 tatt 740  Q
    ||||    
T  9578580 tatt 9578577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 160 - 263
Target Start/End: Original strand, 10972540 - 10972643
Alignment:
Q  160 agtagggatgtcaatgggtacccatggatacagatagtatgatactcgtccccgccacattggataaatatgatacccgtgcctgcctcgtaccctcgtg 259  Q
    ||||||||| |||||| ||| |||| | |||| |||||||||||| |||||||||| | |||||| |||||||||| ||| |  ||  ||||||||||||    
T  10972540 agtagggatatcaatgagtatccattggtacaaatagtatgatacccgtccccgccccgttggatcaatatgatacacgtacacgctccgtaccctcgtg 10972639  T
Q  260 ggta 263  Q
    ||||    
T  10972640 ggta 10972643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 611 - 669
Target Start/End: Complemental strand, 4333693 - 4333635
Alignment:
Q  611 agataagatatatcaggatattttagtaatatacttaatttattattgggtatgggtac 669  Q
    ||||||||||||| |||||||||||||||| || |||||||||||| | ||||||||||    
T  4333693 agataagatatataaggatattttagtaatttaattaatttattatcgagtatgggtac 4333635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 611 - 669
Target Start/End: Complemental strand, 4333897 - 4333839
Alignment:
Q  611 agataagatatatcaggatattttagtaatatacttaatttattattgggtatgggtac 669  Q
    ||||||||||||| |||||||||||||||| || |||||||||||| | ||||||||||    
T  4333897 agataagatatataaggatattttagtaatttaattaatttattatcgagtatgggtac 4333839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 411 - 469
Target Start/End: Original strand, 10972771 - 10972829
Alignment:
Q  411 caaaatttcataaatcatatataattcatagaaaattcatgattcttacataatgcata 469  Q
    |||||||||||| |||||| ||||| ||||||||||||||||||||||| |||| ||||    
T  10972771 caaaatttcatatatcatacataatccatagaaaattcatgattcttacttaatccata 10972829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 106; Significance: 1e-52; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 390 - 730
Target Start/End: Complemental strand, 778786 - 778456
Alignment:
Q  390 aacattcatacataatccattcaaaatttcataaatcatatataattcatagaaaattcatgattcttacataatgcataacatatgtttttaggatgtg 489  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||  ||||| ||||| ||||||    
T  778786 aacatccatacataatcaattcaaaatttcataaatcatatataatccatagaaaattcatgattcttacataatccatatgatatg-ttttatgatgtg 778688  T
Q  490 aatgaagtagaaacagtaaactaataaataagatgaattnnnnnnnnnnnnnnnnnggttattaatgaggaatcttagatgggcaggaaaatttctttca 589  Q
    ||||||||||||||||| |||   | |||||||||||||                   ||| |||||||||||||||| ||| | | |||||||| ||||    
T  778687 aatgaagtagaaacagtgaac---ttaataagatgaattaaaaaaaaaa---------ttaataatgaggaatcttaggtggccggtaaaatttccttca 778600  T
Q  590 ataaggttatcaatt---gggatgagataagatatatcaggatattttagtaatatacttaatttattattgggtatgggtacccgtgggtatgaataca 686  Q
    ||||||| |  | ||   |  || ||||||||||||| || |||||||||| || ||||||||||||||| ||||||||||| ||||| |||||| ||||    
T  778599 ataaggtaacaactttaagtaattagataagatatataagaatattttagtcatttacttaatttattatcgggtatgggtatccgtgagtatgagtaca 778500  T
Q  687 atcaaatccgtgtccgtatccatataataatgggtagtcaaata 730  Q
    ||||||||||||||  |||| |||||||||||| || |||||||    
T  778499 atcaaatccgtgtctatatctatataataatggataatcaaata 778456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 613 - 731
Target Start/End: Complemental strand, 31589998 - 31589880
Alignment:
Q  613 ataagatatatcaggatattttagtaatatacttaatttattattgggtatgggtacccgtgggtatgaatacaatcaaatccgtgtccgtatccatata 712  Q
    ||||||||||| ||||||||||||||||  | ||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||| ||||||    
T  31589998 ataagatatataaggatattttagtaattaagttaatttattattgggtatgggtacccgtgggtatgggtaccatcaaatccgtgtccgtattcatata 31589899  T
Q  713 ataatgggtagtcaaatac 731  Q
    |||||||||||||||||||    
T  31589898 ataatgggtagtcaaatac 31589880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 613 - 731
Target Start/End: Original strand, 35445326 - 35445444
Alignment:
Q  613 ataagatatatcaggatattttagtaatatacttaatttattattgggtatgggtacccgtgggtatgaatacaatcaaatccgtgtccgtatccatata 712  Q
    ||||||||||| ||||||||||||||||  | ||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||| ||||||    
T  35445326 ataagatatataaggatattttagtaattaagttaatttattattgggtatgggtacccgtgggtatgggtaccatcaaatccgtgtccgtattcatata 35445425  T
Q  713 ataatgggtagtcaaatac 731  Q
    |||||||||||||||||||    
T  35445426 ataatgggtagtcaaatac 35445444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 162 - 321
Target Start/End: Original strand, 35444715 - 35444874
Alignment:
Q  162 tagggatgtcaatgggtacccatggatacagatagtatgatactcgtccccgccacattggataaatatgatacccgtgcctgcctcgtaccctcgtggg 261  Q
    ||||||||||||||| |||||||||| || ||||||||||||| ||| |||||| | ||||||||| ||||||||| |||| ||| ||||||| | ||||    
T  35444715 tagggatgtcaatggatacccatggacacggatagtatgatacccgtgcccgccccgttggataaacatgatacccatgcccgccccgtacccacatggg 35444814  T
Q  262 tacccatcatgtggatacccgtgggtattgaggtatccatgtgtattcatgggtacccat 321  Q
    ||||||| |||||| ||||| |||||||||| ||||||||| |||||| |||||||||||    
T  35444815 tacccattatgtgggtacccatgggtattgaagtatccatgggtattcgtgggtacccat 35444874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 613 - 740
Target Start/End: Original strand, 43127288 - 43127415
Alignment:
Q  613 ataagatatatcaggatattttagtaatatacttaatttattattgggtatgggtacccgtgggtatgaatacaatcaaatccgtgtccgtatccatata 712  Q
    ||||||||||| |||||||||||||| | || ||||||||||||  ||||| |||||||||||||||| |||||||||||||||||||||||||||||||    
T  43127288 ataagatatataaggatattttagtagtttagttaatttattatctggtataggtacccgtgggtatggatacaatcaaatccgtgtccgtatccatata 43127387  T
Q  713 ataatgggtagtcaaatactcatttatt 740  Q
    ||||||  ||||||||||| ||||||||    
T  43127388 ataatgaatagtcaaatacccatttatt 43127415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 159 - 321
Target Start/End: Complemental strand, 38032636 - 38032474
Alignment:
Q  159 gagtagggatgtcaatgggtacccatggatacagatagtatgatactcgtccccgccacattggataaatatgatacccgtgcctgcctcgtaccctcgt 258  Q
    |||||||||||||||||||||||||||| ||||||||||||||||  |||||||||| | |||| |||||||||||| |||||| | | |||| ||||||    
T  38032636 gagtagggatgtcaatgggtacccatgggtacagatagtatgatatccgtccccgccccgttgggtaaatatgatactcgtgcccgtcccgtaacctcgt 38032537  T
Q  259 gggtacccatcatgtggatacccgtgggtattgaggtatccatgtgtattcatgggtacccat 321  Q
    || ||||||  |||  | |||||| ||||||||||||||||||| ||||| |||| |||||||    
T  38032536 ggatacccactatgcaggtacccgcgggtattgaggtatccatgggtattaatggatacccat 38032474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 546 - 731
Target Start/End: Complemental strand, 21859307 - 21859119
Alignment:
Q  546 ggttattaatgaggaatcttagatgggcaggaaaatttctttcaataaggttatcaatt----gggatgagataagatatatcaggatattttagtaata 641  Q
    |||||| ||||||||||||||||||||| | |||||||  ||||||||||| | ||| |    |  || | ||||||||||| |  |||||||||||||     
T  21859307 ggttatcaatgaggaatcttagatgggcggtaaaattttcttcaataaggtaa-caactataagtaataatataagatatataaaaatattttagtaatt 21859209  T
Q  642 tacttaatttattattgggtatgggtacccgtgggtatgaatacaatcaaatccgtgtccgtatccatataataatgggtagtcaaatac 731  Q
    ||||||||||||||| |||||||| |||||||||||||  |||||||||||||||||||||||||||||||||| ||| || ||||||||    
T  21859208 tacttaatttattatcgggtatggatacccgtgggtattgatacaatcaaatccgtgtccgtatccatataatagtggataatcaaatac 21859119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 162 - 295
Target Start/End: Complemental strand, 21237184 - 21237051
Alignment:
Q  162 tagggatgtcaatgggtacccatggatacagatagtatgatactcgtccccgccacattggataaatatgatacccgtgcctgcctcgtaccctcgtggg 261  Q
    ||||||||||||||||||||||||| ||| ||||||||||||| | |||||| | | |||||||||||||||||||||||| ||| ||||||||||||||    
T  21237184 tagggatgtcaatgggtacccatgggtacggatagtatgatacccatccccgtcccgttggataaatatgatacccgtgcccgccccgtaccctcgtggg 21237085  T
Q  262 tacccatcatgtggatacccgtgggtattgaggt 295  Q
    ||||||  |||| | |||| | ||||||||||||    
T  21237084 tacccactatgtaggtacctgcgggtattgaggt 21237051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 192 - 321
Target Start/End: Complemental strand, 31590386 - 31590257
Alignment:
Q  192 gatagtatgatactcgtccccgccacattggataaatatgatacccgtgcctgcctcgtaccctcgtgggtacccatcatgtggatacccgtgggtattg 291  Q
    ||||||||||||| ||| |||||| | ||||||||| ||||||||| |||| ||| ||||||| | ||||||||||| |||||| |||||||||||||||    
T  31590386 gatagtatgatacccgtgcccgccccgttggataaacatgatacccatgcccgccccgtacccacatgggtacccattatgtgggtacccgtgggtattg 31590287  T
Q  292 aggtatccatgtgtattcatgggtacccat 321  Q
    | ||||||||| |||||| |||||||||||    
T  31590286 aagtatccatgggtattcgtgggtacccat 31590257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 611 - 740
Target Start/End: Original strand, 2619701 - 2619833
Alignment:
Q  611 agataagatatatcaggatattttagtaatatacttaatttattattgggta---tgggtacccgtgggtatgaatacaatcaaatccgtgtccgtatcc 707  Q
    |||||||||||||  ||||||||||||||| ||||||||||||||| | |||   |||||||||||||| |||  ||||| |||||| ||||| ||||||    
T  2619701 agataagatatatatggatattttagtaatttacttaatttattatcgtgtaatatgggtacccgtggggatgggtacaaccaaatctgtgtctgtatcc 2619800  T
Q  708 atataataatgggtagtcaaatactcatttatt 740  Q
    |||||||||||| ||||||||||||| ||||||    
T  2619801 atataataatggatagtcaaatactcgtttatt 2619833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 618 - 731
Target Start/End: Complemental strand, 38032134 - 38032021
Alignment:
Q  618 atatatcaggatattttagtaatatacttaatttattattgggtatgggtacccgtgggtatgaatacaatcaaatccgtgtccgtatccatataataat 717  Q
    |||||| |||| ||||||||| | || |||||||||||| |||||||||||||||||||| ||  ||||||||||||||||||| ||||||||||| |||    
T  38032134 atatataaggaaattttagtagtttagttaatttattatcgggtatgggtacccgtgggtgtgggtacaatcaaatccgtgtccatatccatataacaat 38032035  T
Q  718 gggtagtcaaatac 731  Q
      ||||||||||||    
T  38032034 atgtagtcaaatac 38032021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 390 - 463
Target Start/End: Complemental strand, 2455893 - 2455820
Alignment:
Q  390 aacattcatacataatccattcaaaatttcataaatcatatataattcatagaaaattcatgattcttacataa 463  Q
    ||||| |||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||| |||||    
T  2455893 aacatccatacataatccattcaaaatttcattaatcatacataatccatagaaaattcatgattctttcataa 2455820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 390 - 497
Target Start/End: Complemental strand, 21859462 - 21859358
Alignment:
Q  390 aacattcatacataatccattcaaaatttcataaatcatatataattcatagaaaattcatgattcttacataatgcataacatatgtttttaggatgtg 489  Q
    ||||| |||||||||||||| ||||||||||||||||| |||  ||||||||||||||||||||||||| ||| | ||||| ||||| ||||| || |||    
T  21859462 aacatccatacataatccatacaaaatttcataaatcacata--attcatagaaaattcatgattcttagatactccataagatatg-ttttatgacgtg 21859366  T
Q  490 aatgaagt 497  Q
    ||||||||    
T  21859365 aatgaagt 21859358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 390 - 469
Target Start/End: Original strand, 45688596 - 45688675
Alignment:
Q  390 aacattcatacataatccattcaaaatttcataaatcatatataattcatagaaaattcatgattcttacataatgcata 469  Q
    |||||||||||||||| |||| |||||||||||||||||| | ||| ||||||||||||| |||||||||||||| ||||    
T  45688596 aacattcatacataattcattaaaaatttcataaatcatacacaatccatagaaaattcacgattcttacataatccata 45688675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 618 - 740
Target Start/End: Complemental strand, 45885191 - 45885069
Alignment:
Q  618 atatatcaggatattttagtaatatacttaatttattattgggtatgggtacccgtgggtatgaatacaatcaaatccgtgtccgtatccatataataat 717  Q
    |||||| |||||||||||||||| | ||||||||||||| |||||||||||| |||||| |||  || ||||||||  ||||  |||||||| ||||  |    
T  45885191 atatataaggatattttagtaatttgcttaatttattatcgggtatgggtactcgtgggcatgggtataatcaaatttgtgtatgtatccatgtaatttt 45885092  T
Q  718 gggtagtcaaatactcatttatt 740  Q
     || |||||||||||||||||||    
T  45885091 tgggagtcaaatactcatttatt 45885069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 162 - 302
Target Start/End: Complemental strand, 21859679 - 21859539
Alignment:
Q  162 tagggatgtcaatgggtacccatggatacagatagtatgatactcgtccccgccacattggataaatatgatacccgtgcctgcctcgtaccctcgtggg 261  Q
    ||||||||||||||| ||||||||| |||| ||||||||||||||||||||||    |||||||||||||||| | ||| | | | |||| |||| ||||    
T  21859679 tagggatgtcaatggatacccatgggtacaaatagtatgatactcgtccccgctctgttggataaatatgatatcggtgtccgtcccgtatcctcatggg 21859580  T
Q  262 tacccatcatgtggatacccgtgggtattgaggtatccatg 302  Q
    || |||  |||  | ||||| |||||||||||| |||||||    
T  21859579 tatccactatgcaggtacccatgggtattgagggatccatg 21859539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 162 - 242
Target Start/End: Complemental strand, 30604313 - 30604233
Alignment:
Q  162 tagggatgtcaatgggtacccatggatacagatagtatgatactcgtccccgccacattggataaatatgatacccgtgcc 242  Q
    |||||||||||||||||| |||||| ||| | |||||||||| ||||||||||| | || |||||||||||||||||||||    
T  30604313 tagggatgtcaatgggtatccatgggtacgggtagtatgatattcgtccccgccccgttagataaatatgatacccgtgcc 30604233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 674 - 740
Target Start/End: Complemental strand, 21236699 - 21236633
Alignment:
Q  674 gggtatgaatacaatcaaatccgtgtccgtatccatataataatgggtagtcaaatactcatttatt 740  Q
    ||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||| | ||||||    
T  21236699 gggtatggatagaatcaaatccgtgtccgtatccatataataatggatagtcaaatacccgtttatt 21236633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 162 - 267
Target Start/End: Original strand, 43126863 - 43126968
Alignment:
Q  162 tagggatgtcaatgggtacccatggatacagatagtatgatactcgtccccgccacattggataaatatgatacccgtgcctgcctcgtaccctcgtggg 261  Q
    ||||||| ||||||| ||||||||  ||| ||||||||||||  |||| ||||| ||||| ||||| ||||||| |||| | ||| ||||||||||||||    
T  43126863 tagggatttcaatggatacccatgagtacggatagtatgatatccgtctccgccccattgaataaacatgatacacgtgtccgccccgtaccctcgtggg 43126962  T
Q  262 taccca 267  Q
    ||||||    
T  43126963 taccca 43126968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 219 - 319
Target Start/End: Complemental strand, 2456067 - 2455967
Alignment:
Q  219 ttggataaatatgatacccgtgcctgcctcgtaccctcgtgggtacccatcatgtggatacccgtgggtattgaggtatccatgtgtattcatgggtacc 318  Q
    ||||||||||||||||| |||| | |||  |||||||||| ||||||| | |||||||||||| | ||||||||| |||||| | ||||||| |||||||    
T  2456067 ttggataaatatgatactcgtgtccgccctgtaccctcgtaggtacccgttatgtggatacccataggtattgagatatccacgagtattcacgggtacc 2455968  T
Q  319 c 319  Q
    |    
T  2455967 c 2455967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 632 - 733
Target Start/End: Original strand, 45689120 - 45689224
Alignment:
Q  632 tttagtaatatacttaatttattattgggtat----gggtacccgtgggtatgaatacaatcaaatccgtgtccgtatccatataataatgggtagtcaa 727  Q
    ||||||||| |||||| |||||||| ||||||    ||||||||||| ||||| ||||| |||||| ||||||| |||||||||||||| || |||||||    
T  45689120 tttagtaatttacttagtttattatcgggtatatatgggtacccgtgagtatggataca-tcaaattcgtgtccatatccatataataacggatagtcaa 45689218  T
Q  728 atactc 733  Q
    ||||||    
T  45689219 atactc 45689224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 390 - 469
Target Start/End: Original strand, 35444950 - 35445025
Alignment:
Q  390 aacattcatacataatccattcaaaatttcataaatcatatataattcatagaaaattcatgattcttacataatgcata 469  Q
    ||||| ||||||||||| |||||||||||||||||||    ||||| |||||||||||||| ||||||||||||| ||||    
T  35444950 aacatccatacataatctattcaaaatttcataaatc----ataatccatagaaaattcataattcttacataattcata 35445025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 239
Target Start/End: Complemental strand, 38026465 - 38026388
Alignment:
Q  162 tagggatgtcaatgggtacccatggatacagatagtatgatactcgtccccgccacattggataaatatgatacccgt 239  Q
    |||||||||||||||||| |||||| ||| | ||||||||||  |||||||||| | ||||||||||||| |||||||    
T  38026465 tagggatgtcaatgggtaaccatgggtacgggtagtatgatatccgtccccgccccgttggataaatatggtacccgt 38026388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 162 - 234
Target Start/End: Complemental strand, 2243250 - 2243178
Alignment:
Q  162 tagggatgtcaatgggtacccatggatacagatagtatgatactcgtccccgccacattggataaatatgata 234  Q
    ||||||||||||||| || |||||| ||| |||||||||||||||||| ||| | | ||||||||||||||||    
T  2243250 tagggatgtcaatggatatccatgggtacggatagtatgatactcgtctccgtcccgttggataaatatgata 2243178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 401 - 461
Target Start/End: Complemental strand, 47129870 - 47129811
Alignment:
Q  401 ataatccattcaaaatttcataaatcatatataattcatagaaaattcatgattcttacat 461  Q
    |||||||||||||| |||||||||||||| |||||||||| |||| |||||||||||||||    
T  47129870 ataatccattcaaa-tttcataaatcatacataattcatacaaaaatcatgattcttacat 47129811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 408 - 503
Target Start/End: Complemental strand, 21236954 - 21236861
Alignment:
Q  408 attcaaaatttcataaatcatatataattcatagaaaattcatgattcttacataatgcataacatatgtttttaggatgtgaatgaagtagaaac 503  Q
    |||||||||||||||||||||| ||||| |||||||||||||| | |||||| |||| ||||  ||||||||||  ||||| ||||||||| ||||    
T  21236954 attcaaaatttcataaatcatacataatccatagaaaattcatta-tcttacgtaatccatatgatatgttttt-tgatgtaaatgaagtataaac 21236861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 219 - 302
Target Start/End: Complemental strand, 45885624 - 45885542
Alignment:
Q  219 ttggataaatatgatacccgtgcctgcctcgtaccctcgtgggtacccatcatgtggatacccgtgggtattgaggtatccatg 302  Q
    |||||||||||||||||||||| |  ||| |||||||||||| ||||||  ||| ||||||||| |||||||||||||| ||||    
T  45885624 ttggataaatatgatacccgtgtccacct-gtaccctcgtggatacccactatgcggatacccgcgggtattgaggtattcatg 45885542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 683 - 729
Target Start/End: Complemental strand, 2455640 - 2455594
Alignment:
Q  683 tacaatcaaatccgtgtccgtatccatataataatgggtagtcaaat 729  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||||    
T  2455640 tacaatcaaatccatgtccgtattcatataataatgggtagtcaaat 2455594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 390 - 469
Target Start/End: Complemental strand, 31590181 - 31590106
Alignment:
Q  390 aacattcatacataatccattcaaaatttcataaatcatatataattcatagaaaattcatgattcttacataatgcata 469  Q
    ||||| ||||||||||| |||||||||||||||||||    ||||| ||||| |||||||| ||||||||||||| ||||    
T  31590181 aacatccatacataatctattcaaaatttcataaatc----ataatccataggaaattcataattcttacataattcata 31590106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 317
Target Start/End: Original strand, 45688365 - 45688518
Alignment:
Q  163 agggatgtcaatgggtacccatggatacagatagtatgatactcgtccccgccacattggataaatatgatacccgtgcctgcctcgtaccctcgtgggt 262  Q
    |||||||||||||| ||| |||||||||| |||||||||||  | |||||| | ||||||||||||||||||   ||||| | |  ||||||| |||| |    
T  45688365 agggatgtcaatgg-tactcatggatacaaatagtatgatatacttccccgtcccattggataaatatgatatatgtgcccgtcctgtacccttgtggat 45688463  T
Q  263 acccatcatgtggatacccgtgggtattgaggtatccatgtgtattcatgggtac 317  Q
    |||||  ||| || | | ||  | |||||||||||||||| |||||||| |||||    
T  45688464 acccactatgcgggtgctcgcagatattgaggtatccatgggtattcataggtac 45688518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 162 - 231
Target Start/End: Complemental strand, 784069 - 784000
Alignment:
Q  162 tagggatgtcaatgggtacccatggatacagatagtatgatactcgtccccgccacattggataaatatg 231  Q
    ||||||||||||||||||| ||||| ||| ||||||||||||| ||||||| || | || ||||||||||    
T  784069 tagggatgtcaatgggtactcatgggtacggatagtatgatacacgtccccaccccgttagataaatatg 784000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 618 - 669
Target Start/End: Complemental strand, 2455689 - 2455638
Alignment:
Q  618 atatatcaggatattttagtaatatacttaatttattattgggtatgggtac 669  Q
    |||||| |||||||||||||||| |||||||||||||||  |||||||||||    
T  2455689 atatataaggatattttagtaatttacttaatttattatcaggtatgggtac 2455638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 413 - 460
Target Start/End: Original strand, 43127087 - 43127134
Alignment:
Q  413 aaatttcataaatcatatataattcatagaaaattcatgattcttaca 460  Q
    ||||||||||||||||| ||||| |||||||||||||| |||||||||    
T  43127087 aaatttcataaatcatacataatccatagaaaattcattattcttaca 43127134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 390 - 429
Target Start/End: Complemental strand, 45885459 - 45885420
Alignment:
Q  390 aacattcatacataatccattcaaaatttcataaatcata 429  Q
    ||||| |||||||||| |||||||||||||||||||||||    
T  45885459 aacatccatacataattcattcaaaatttcataaatcata 45885420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 272 - 321
Target Start/End: Complemental strand, 778908 - 778859
Alignment:
Q  272 gtggatacccgtgggtattgaggtatccatgtgtattcatgggtacccat 321  Q
    |||| |||||| ||||| ||||||||||||| ||||| ||||||||||||    
T  778908 gtgggtacccgcgggtactgaggtatccatgggtatttatgggtacccat 778859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 240
Target Start/End: Original strand, 7845480 - 7845557
Alignment:
Q  163 agggatgtcaatgggtacccatggatacagatagtatgatactcgtccccgccacattggataaatatgatacccgtg 240  Q
    ||||||||||||||||| ||||   ||| | ||||||||||  |||||||||| | |||||||| |||| ||||||||    
T  7845480 agggatgtcaatgggtatccataagtacgggtagtatgatatccgtccccgccccgttggataattatggtacccgtg 7845557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 95; Significance: 4e-46; HSPs: 43)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 613 - 731
Target Start/End: Complemental strand, 221288 - 221170
Alignment:
Q  613 ataagatatatcaggatattttagtaatatacttaatttattattgggtatgggtacccgtgggtatgaatacaatcaaatccgtgtccgtatccatata 712  Q
    ||||||||||| |||||||||||||||| ||||||||||||||| ||||||| |||||| |||||||| |||||||||||||||||||||||||||||||    
T  221288 ataagatatataaggatattttagtaatttacttaatttattatagggtatgtgtacccatgggtatggatacaatcaaatccgtgtccgtatccatata 221189  T
Q  713 ataatgggtagtcaaatac 731  Q
    |||||||||||||||||||    
T  221188 ataatgggtagtcaaatac 221170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 162 - 321
Target Start/End: Original strand, 44820310 - 44820469
Alignment:
Q  162 tagggatgtcaatgggtacccatggatacagatagtatgatactcgtccccgccacattggataaatatgatacccgtgcctgcctcgtaccctcgtggg 261  Q
    |||||||||||||||||||||||||| || ||||||||||||| ||| |||||| | ||||||||| ||||||||| |||| ||| ||||||| | ||||    
T  44820310 tagggatgtcaatgggtacccatggacacggatagtatgatacccgtgcccgccccgttggataaacatgatacccatgcccgccccgtacccacatggg 44820409  T
Q  262 tacccatcatgtggatacccgtgggtattgaggtatccatgtgtattcatgggtacccat 321  Q
    ||||||| |||||| |||||||||||||||| ||||||||| |||||| |||||||||||    
T  44820410 tacccattatgtgggtacccgtgggtattgaagtatccatgggtattcgtgggtacccat 44820469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 162 - 321
Target Start/End: Complemental strand, 29285333 - 29285174
Alignment:
Q  162 tagggatgtcaatgggtacccatggatacagatagtatgatactcgtccccgccacattggataaatatgatacccgtgcctgcctcgtaccctcgtggg 261  Q
    ||||||||||||||| |||||||||| || ||||||||||||| |||  ||||| | ||||||||| ||||||||| |||| ||| ||||||| ||||||    
T  29285333 tagggatgtcaatggatacccatggacacggatagtatgatacccgtgtccgccccgttggataaacatgatacccatgcccgccccgtacccacgtggg 29285234  T
Q  262 tacccatcatgtggatacccgtgggtattgaggtatccatgtgtattcatgggtacccat 321  Q
    ||||||| |||||| |||||||||||||||| ||||||||| |||||| |||||||||||    
T  29285233 tacccattatgtgggtacccgtgggtattgaagtatccatgggtattcgtgggtacccat 29285174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 613 - 731
Target Start/End: Complemental strand, 5486656 - 5486538
Alignment:
Q  613 ataagatatatcaggatattttagtaatatacttaatttattattgggtatgggtacccgtgggtatgaatacaatcaaatccgtgtccgtatccatata 712  Q
    ||||||||||| ||||||||||||||||  | ||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||| ||||||    
T  5486656 ataagatatataaggatattttagtaattaagttaatttattattgggtatgggtacccgtgggtatgggtaccatcaaatccgtgtccgtattcatata 5486557  T
Q  713 ataatgggtagtcaaatac 731  Q
    |||||||||||||||||||    
T  5486556 ataatgggtagtcaaatac 5486538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 613 - 731
Target Start/End: Complemental strand, 29284954 - 29284836
Alignment:
Q  613 ataagatatatcaggatattttagtaatatacttaatttattattgggtatgggtacccgtgggtatgaatacaatcaaatccgtgtccgtatccatata 712  Q
    ||||||||||| ||||||||||||||||  | ||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||| ||||||    
T  29284954 ataagatatataaggatattttagtaattaagttaatttattattgggtatgggtacccgtgggtatgggtaccatcaaatccgtgtccgtattcatata 29284855  T
Q  713 ataatgggtagtcaaatac 731  Q
    |||||||||||||||||||    
T  29284854 ataatgggtagtcaaatac 29284836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 613 - 731
Target Start/End: Original strand, 44820728 - 44820846
Alignment:
Q  613 ataagatatatcaggatattttagtaatatacttaatttattattgggtatgggtacccgtgggtatgaatacaatcaaatccgtgtccgtatccatata 712  Q
    ||||||||||| ||||||||||||||||  | ||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||| ||||||    
T  44820728 ataagatatataaggatattttagtaattaagttaatttattattgggtatgggtacccgtgggtatgggtaccatcaaatccgtgtccgtattcatata 44820827  T
Q  713 ataatgggtagtcaaatac 731  Q
    |||||||||||||||||||    
T  44820828 ataatgggtagtcaaatac 44820846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 161 - 318
Target Start/End: Complemental strand, 5487106 - 5486949
Alignment:
Q  161 gtagggatgtcaatgggtacccatggatacagatagtatgatactcgtccccgccacattggataaatatgatacccgtgcctgcctcgtaccctcgtgg 260  Q
    ||||||||||||||||||||||||||| || ||||||||||||| ||| |||||| | ||||||||| ||||||||| |||| ||| ||||||| | |||    
T  5487106 gtagggatgtcaatgggtacccatggacacggatagtatgatacccgtgcccgccccgttggataaacatgatacccatgcccgccccgtacccacatgg 5487007  T
Q  261 gtacccatcatgtggatacccgtgggtattgaggtatccatgtgtattcatgggtacc 318  Q
    ||| |||| |||||| |||||||||||||||| ||||||||| |||||| ||||||||    
T  5487006 gtatccattatgtgggtacccgtgggtattgaagtatccatgggtattcgtgggtacc 5486949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 160 - 321
Target Start/End: Complemental strand, 46395347 - 46395186
Alignment:
Q  160 agtagggatgtcaatgggtacccatggatacagatagtatgatactcgtccccgccacattggataaatatgatacccgtgcctgcctcgtaccctcgtg 259  Q
    ||||| |||||||||||||||||||| |||| |||| |||||||| |||||||||| | ||||||||| ||||||||||||||  || || |||||||||    
T  46395347 agtagtgatgtcaatgggtacccatgaatacggataatatgatacccgtccccgccccgttggataaagatgatacccgtgcccaccccgcaccctcgtg 46395248  T
Q  260 ggtacccatcatgtggatacccgtgggtattgaggtatccatgtgtattcatgggtacccat 321  Q
    ||||||||  ||| |  |||||||||||| ||||||||||||| ||||||||||||||||||    
T  46395247 ggtacccactatgcgtgtacccgtgggtaatgaggtatccatgggtattcatgggtacccat 46395186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 611 - 731
Target Start/End: Complemental strand, 34442295 - 34442175
Alignment:
Q  611 agataagatatatcaggatattttagtaatatacttaatttattattgggtatgggtacccgtgggtatgaatacaatcaaatccgtgtccgtatccata 710  Q
    ||||||||||||| ||||||||||| |||| ||||||||||||||| |||||||||||||||||| ||||  ||||||||||||||||||| ||||||||    
T  34442295 agataagatatataaggatattttaataatttacttaatttattatcgggtatgggtacccgtggatatgggtacaatcaaatccgtgtccatatccata 34442196  T
Q  711 taataatgggtagtcaaatac 731  Q
    ||||||||||||||| |||||    
T  34442195 taataatgggtagtctaatac 34442175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 611 - 740
Target Start/End: Complemental strand, 27871857 - 27871728
Alignment:
Q  611 agataagatatatcaggatattttagtaatatacttaatttattattgggtatgggtacccgtgggtatgaatacaatcaaatccgtgtccgtatccata 710  Q
    ||||||||||||| || ||||||||||||| ||||||||||||||| || |||| |||||||| ||||||| |||||||||||  |||||||||||||||    
T  27871857 agataagatatataagaatattttagtaatttacttaatttattatcggatatgcgtacccgtaggtatgagtacaatcaaatttgtgtccgtatccata 27871758  T
Q  711 taataatgggtagtcaaatactcatttatt 740  Q
    ||||||||| ||||||||||| ||||||||    
T  27871757 taataatggatagtcaaatacccatttatt 27871728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 390 - 511
Target Start/End: Complemental strand, 1143419 - 1143299
Alignment:
Q  390 aacattcatacataatccattcaaaatttcataaatcatatataattcatagaaaattcatgattcttacataatgcataacatatgtttttaggatgtg 489  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||||  ||||| ||||| ||| ||    
T  1143419 aacatccatacataatccattcaaaatttcataaaccatatataatccatagaaaattcatgattcttacataatccatatgatatg-ttttatgatatg 1143321  T
Q  490 aatgaagtagaaacagtaaact 511  Q
    |||||||| |||||| ||||||    
T  1143320 aatgaagtggaaacattaaact 1143299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 546 - 740
Target Start/End: Complemental strand, 1143261 - 1143064
Alignment:
Q  546 ggttattaatgaggaatcttagatgggcaggaaaatttctttcaataaggttatcaatt---gggatgagataagatatatcaggatattttagtaatat 642  Q
    ||||||||| |||||||||||| ||||||| |||||||| ||||||||||| |  | ||   |  ||  |||||||||||| |||||||| ||||||| |    
T  1143261 ggttattaacgaggaatcttaggtgggcagcaaaatttccttcaataaggtaacaactttaagtaataggataagatatataaggatattctagtaattt 1143162  T
Q  643 acttaatttattattgggtatgggtacccgtgggtatgaatac-aatcaaatccgtgtccgtatccatataataatgggtagtcaaatactcatttatt 740  Q
    |||||||||||||| ||||||||||| ||||||||||| |||| ||||||||   ||| ||| ||||||||||||||||||||||||||| | ||||||    
T  1143161 acttaatttattatcgggtatgggta-ccgtgggtatggatacaaatcaaatatatgttcgtgtccatataataatgggtagtcaaatacccgtttatt 1143064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 162 - 294
Target Start/End: Original strand, 46251380 - 46251512
Alignment:
Q  162 tagggatgtcaatgggtacccatggatacagatagtatgatactcgtccccgccacattggataaatatgatacccgtgcctgcctcgtaccctcgtggg 261  Q
    ||||||||||||||||||||||||||||  |||||||||||| |||||||||||   ||||||||||||||||| |||||| |||||||||||| |||||    
T  46251380 tagggatgtcaatgggtacccatggatattgatagtatgatattcgtccccgccttgttggataaatatgatacacgtgcccgcctcgtacccttgtggg 46251479  T
Q  262 tacccatcatgtggatacccgtgggtattgagg 294  Q
    ||||||  ||| || |||||| | |||||||||    
T  46251480 tacccactatgcgggtacccgcgagtattgagg 46251512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 613 - 740
Target Start/End: Complemental strand, 46394882 - 46394755
Alignment:
Q  613 ataagatatatcaggatattttagtaatatacttaatttattattgggtatgggtacccgtgggtatgaatacaatcaaatccgtgtccgtatccatata 712  Q
    ||||||||||| | ||||||||||| || |||||||||||| || |||||||| || |||| |||||  |||||||||||||||||||| ||| ||||||    
T  46394882 ataagatatataaagatattttagtcatttacttaatttatcatcgggtatggatatccgtaggtatagatacaatcaaatccgtgtccatattcatata 46394783  T
Q  713 ataatgggtagtcaaatactcatttatt 740  Q
    ||||| | ||||||||||||||||||||    
T  46394782 ataatagatagtcaaatactcatttatt 46394755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 163 - 321
Target Start/End: Complemental strand, 18903371 - 18903212
Alignment:
Q  163 agggatgtcaatgggtacccatggatacagatagtatgatactcgtccccgccacattggataaatatgatacccgtgcctgcctcgtaccctcgtgggt 262  Q
    |||||||||||||| || |||| || || ||||||||||||  ||||||| || | || |||||||| ||||| |||||| ||| ||||||| |||||||    
T  18903371 agggatgtcaatggatatccatagagacggatagtatgatagccgtccccaccccgttagataaatacgatacacgtgcccgccccgtacccgcgtgggt 18903272  T
Q  263 acccatcatgtggat-acccgtgggtattgaggtatccatgtgtattcatgggtacccat 321  Q
    |||||  ||  || | ||||||||||||||||||||||||| |||||| |||||||||||    
T  18903271 acccactatacgggtaacccgtgggtattgaggtatccatgggtattcgtgggtacccat 18903212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 162 - 302
Target Start/End: Complemental strand, 221697 - 221558
Alignment:
Q  162 tagggatgtcaatgggtacccatggatacagatagtatgatactcgtccccgccacattggataaatatgatacccgtgcctgcctcgtaccctcgtggg 261  Q
    ||||||||||||||| ||||||||||| |  |||||||||||| ||||||||||   ||||||||||||| |||||||| |  || ||||| ||| ||||    
T  221697 tagggatgtcaatgg-tacccatggatgcgaatagtatgatacccgtccccgccctgttggataaatatggtacccgtgtccaccccgtacgctcatggg 221599  T
Q  262 tacccatcatgtggatacccgtgggtattgaggtatccatg 302  Q
    ||||||  ||| || |||||||||||||||||| |||||||    
T  221598 tacccactatgcgggtacccgtgggtattgagggatccatg 221558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 390 - 511
Target Start/End: Complemental strand, 52597149 - 52597025
Alignment:
Q  390 aacattcatacataatccattcaaaatttcataaatcatatataattcatagaaaattcatgattcttacataatgc----ataacatatgtttttagga 485  Q
    ||||| |||||| |||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |    |||  ||||||||||  ||    
T  52597149 aacatccatacacaatctattcaaaatttcataaatcatacataatccatagaaaattcatgattcttacataatccatatatatgatatgttttt-tga 52597051  T
Q  486 tgtgaatgaagtagaaacagtaaact 511  Q
    ||| ||||||||||||||||| ||||    
T  52597050 tgtaaatgaagtagaaacagtgaact 52597025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 162 - 318
Target Start/End: Original strand, 55710043 - 55710199
Alignment:
Q  162 tagggatgtcaatgggtacccatggatacagatagtatgatactcgtccccgccacattggataaatatgatacccgtgcctgcctcgtaccctcgtggg 261  Q
    ||||||||||||| |||| ||||||| || ||||||||||| |||||  ||||  | ||||||||||||||||||| |||| ||| ||||||||| |||     
T  55710043 tagggatgtcaataggtatccatggacacggatagtatgatcctcgtgtccgctccgttggataaatatgatacccatgcccgccccgtaccctcatgga 55710142  T
Q  262 tacccatcatgtggatacccgtgggtattgaggtatccatgtgtattcatgggtacc 318  Q
    ||||||| || |   |||||||||||||| | ||||||||| |||||| | ||||||    
T  55710143 tacccattatataagtacccgtgggtatttaagtatccatgagtattcgtaggtacc 55710199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 613 - 717
Target Start/End: Original strand, 55710511 - 55710615
Alignment:
Q  613 ataagatatatcaggatattttagtaatatacttaatttattattgggtatgggtacccgtgggtatgaatacaatcaaatccgtgtccgtatccatata 712  Q
    ||||||||||| | ||||||||||||||  | ||||||||||||||||||| ||||| ||||| |||   ||| ||||||||||||||||||||||||||    
T  55710511 ataagatatataaagatattttagtaattaatttaatttattattgggtataggtactcgtggatataggtactatcaaatccgtgtccgtatccatata 55710610  T
Q  713 ataat 717  Q
    |||||    
T  55710611 ataat 55710615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 390 - 464
Target Start/End: Complemental strand, 46395116 - 46395042
Alignment:
Q  390 aacattcatacataatccattcaaaatttcataaatcatatataattcatagaaaattcatgattcttacataat 464  Q
    ||||| |||||||||||||||| ||||||| ||||||||| ||||| |||||||||||||||||| |||||||||    
T  46395116 aacatccatacataatccattccaaatttcgtaaatcatacataatccatagaaaattcatgatttttacataat 46395042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 390 - 469
Target Start/End: Original strand, 18906376 - 18906455
Alignment:
Q  390 aacattcatacataatccattcaaaatttcataaatcatatataattcatagaaaattcatgattcttacataatgcata 469  Q
    ||||| ||| |||||||| ||||||||||||| ||||||| ||||| ||||||||||||||||||||| |||||| ||||    
T  18906376 aacatccatgcataatcccttcaaaatttcatcaatcatacataatccatagaaaattcatgattcttgcataatccata 18906455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 390 - 461
Target Start/End: Complemental strand, 18903138 - 18903068
Alignment:
Q  390 aacattcatacataatccattcaaaatttcataaatcatatataattcatagaaaattcatgattcttacat 461  Q
    ||||| ||||||||||||||||||| |||||||||||||| ||||| |||| |||||||||| |||||||||    
T  18903138 aacatccatacataatccattcaaa-tttcataaatcatacataatccatacaaaattcatgcttcttacat 18903068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 390 - 469
Target Start/End: Complemental strand, 5486870 - 5486795
Alignment:
Q  390 aacattcatacataatccattcaaaatttcataaatcatatataattcatagaaaattcatgattcttacataatgcata 469  Q
    ||||| ||||||||||| |||||||||||||||||||    ||||| |||||||||||||| ||||||||||||| ||||    
T  5486870 aacatccatacataatctattcaaaatttcataaatc----ataatccatagaaaattcataattcttacataattcata 5486795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 390 - 469
Target Start/End: Original strand, 44820545 - 44820620
Alignment:
Q  390 aacattcatacataatccattcaaaatttcataaatcatatataattcatagaaaattcatgattcttacataatgcata 469  Q
    ||||| ||||||||||| |||||||||||||||||||    ||||| |||||||||||||| ||||||||||||| ||||    
T  44820545 aacatccatacataatctattcaaaatttcataaatc----ataatccatagaaaattcataattcttacataattcata 44820620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 193 - 302
Target Start/End: Complemental strand, 1143600 - 1143491
Alignment:
Q  193 atagtatgatactcgtccccgccacattggataaatatgatacccgtgcctgcctcgtaccctcgtgggtacccatcatgtggatacccgtgggtattga 292  Q
    |||||||||||| ||||||| || | ||||||||||||| |||||||||| | | || | ||||||||||||||   ||| || ||| | ||||||||||    
T  1143600 atagtatgatacccgtccccaccccgttggataaatatgttacccgtgcccgtcccgcatcctcgtgggtacccgctatgcgggtacacatgggtattga 1143501  T
Q  293 ggtatccatg 302  Q
    ||||||||||    
T  1143500 ggtatccatg 1143491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 396 - 469
Target Start/End: Complemental strand, 29285092 - 29285023
Alignment:
Q  396 catacataatccattcaaaatttcataaatcatatataattcatagaaaattcatgattcttacataatgcata 469  Q
    ||||||||||| |||||||||||||||||||    ||||| |||||||||||||| ||||||||||||| ||||    
T  29285092 catacataatctattcaaaatttcataaatc----ataatccatagaaaattcataattcttacataattcata 29285023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 162 - 242
Target Start/End: Complemental strand, 42595886 - 42595806
Alignment:
Q  162 tagggatgtcaatgggtacccatggatacagatagtatgatactcgtccccgccacattggataaatatgatacccgtgcc 242  Q
    |||||||||||||||||| |||||||||| ||||||||||||  | | |||||  | |||||||||||||| |||||||||    
T  42595886 tagggatgtcaatgggtatccatggatacggatagtatgatatccattcccgctccgttggataaatatgacacccgtgcc 42595806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 397 - 440
Target Start/End: Complemental strand, 27872042 - 27871999
Alignment:
Q  397 atacataatccattcaaaatttcataaatcatatataattcata 440  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  27872042 atacataatccattcaaaatttcataaatcatatgtaattcata 27871999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 390 - 457
Target Start/End: Complemental strand, 51970560 - 51970494
Alignment:
Q  390 aacattcatacataatccattcaaaatttcataaatcatatataattcatagaaaattcatgattctt 457  Q
    |||||||||||||||||||||| ||||||| ||||||||| ||||| |||| |||||| || ||||||    
T  51970560 aacattcatacataatccattc-aaatttcgtaaatcatacataatccatacaaaattaataattctt 51970494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 219 - 302
Target Start/End: Complemental strand, 52597304 - 52597221
Alignment:
Q  219 ttggataaatatgatacccgtgcctgcctcgtaccctcgtgggtacccatcatgtggatacccgtgggtattgaggtatccatg 302  Q
    |||||||||||||||||||||||| | | |||| |||| |||||| |||  ||| || |||||| || ||||||||||||||||    
T  52597304 ttggataaatatgatacccgtgcccgtcccgtatcctcatgggtatccactatgcgggtacccgcggatattgaggtatccatg 52597221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 630 - 740
Target Start/End: Complemental strand, 18902730 - 18902620
Alignment:
Q  630 attttagtaatatacttaatttattattgggtatgggtacccgtgggtatgaatacaatcaaatccgtgtccgtatccatataataatgggtagtcaaat 729  Q
    |||||||| || ||||||||||||||| | |||||||||| |||||| | |  ||  || |||| |||||| ||||| ||| | ||||||||||||||||    
T  18902730 attttagtcatttacttaatttattatcgagtatgggtactcgtgggcacgggtatcattaaattcgtgtctgtatctataaactaatgggtagtcaaat 18902631  T
Q  730 actcatttatt 740  Q
    || | ||||||    
T  18902630 acccgtttatt 18902620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 263
Target Start/End: Original strand, 18906156 - 18906254
Alignment:
Q  165 ggatgtcaatgggtacccatggatacagatagtatgatactcgtccccgccacattggataaatatgatacccgtgcctgcctcgtaccctcgtgggta 263  Q
    |||||| ||||||||||||||| |||||||||||||||||| ||  ||||  | |||||||||||| ||| |   | | |||||||||| |||||||||    
T  18906156 ggatgttaatgggtacccatgggtacagatagtatgatacttgtttccgctccgttggataaatataatatcatggtcggcctcgtaccttcgtgggta 18906254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 234
Target Start/End: Complemental strand, 51970781 - 51970711
Alignment:
Q  164 gggatgtcaatgggtacccatggatacagatagtatgatactcgtccccgccacattggataaatatgata 234  Q
    |||||||||||| ||| ||||||||||||||||||  ||||||||| |||   | ||||||||||||||||    
T  51970781 gggatgtcaatgagtatccatggatacagatagtacaatactcgtctccgtttcgttggataaatatgata 51970711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 674 - 740
Target Start/End: Complemental strand, 52596871 - 52596805
Alignment:
Q  674 gggtatgaatacaatcaaatccgtgtccgtatccatataataatgggtagtcaaatactcatttatt 740  Q
    |||||||  ||||||||||| ||| || |||||||||||||||||||||||||| ||| | ||||||    
T  52596871 gggtatgggtacaatcaaatacgtctctgtatccatataataatgggtagtcaagtacccgtttatt 52596805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 231
Target Start/End: Complemental strand, 15731437 - 15731368
Alignment:
Q  162 tagggatgtcaatgggtacccatggatacagatagtatgatactcgtccccgccacattggataaatatg 231  Q
    |||||||||||||| ||| |||||| ||||| ||||||||||  ||||| |||  |||||||||||||||    
T  15731437 tagggatgtcaatgagtatccatgggtacaggtagtatgatatccgtcctcgctccattggataaatatg 15731368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 626 - 699
Target Start/End: Complemental strand, 42432793 - 42432720
Alignment:
Q  626 ggatattttagtaatatacttaatttattattgggtatgggtacccgtgggtatgaatacaatcaaatccgtgt 699  Q
    ||||||||||||||| |||||||||||||| |||||| || |||| | ||| |||| ||  |||||||||||||    
T  42432793 ggatattttagtaatttacttaatttattagtgggtacggatacctgcgggcatgagtatcatcaaatccgtgt 42432720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 231
Target Start/End: Complemental strand, 42433607 - 42433538
Alignment:
Q  162 tagggatgtcaatgggtacccatggatacagatagtatgatactcgtccccgccacattggataaatatg 231  Q
    ||||||||||||||| || |||||  ||||||||||||||||  |||| |||||  ||||||||||||||    
T  42433607 tagggatgtcaatggatatccatgagtacagatagtatgatatccgtctccgccctattggataaatatg 42433538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 686 - 730
Target Start/End: Original strand, 18906566 - 18906610
Alignment:
Q  686 aatcaaatccgtgtccgtatccatataataatgggtagtcaaata 730  Q
    ||||||||||||||  ||||||||||||||| |||||||||||||    
T  18906566 aatcaaatccgtgtttgtatccatataataaggggtagtcaaata 18906610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 628 - 740
Target Start/End: Original strand, 49408420 - 49408532
Alignment:
Q  628 atattttagtaatatacttaatttattattgggtatgggtacccgtgggtatgaatacaatcaaatccgtgtccgtatccatataataatgggtagtcaa 727  Q
    ||||||||||||| ||||||||||||||  ||||| |  |||||| ||| | |||||  |||||||| |||| ||| || ||| | ||| ||||||| ||    
T  49408420 atattttagtaatttacttaatttattaacgggtacgtatacccgcgggcacgaatatcatcaaatctgtgttcgtgtctataaagtaacgggtagttaa 49408519  T
Q  728 atactcatttatt 740  Q
    |||| ||||||||    
T  49408520 atacccatttatt 49408532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 546 - 596
Target Start/End: Complemental strand, 221361 - 221311
Alignment:
Q  546 ggttattaatgaggaatcttagatgggcaggaaaatttctttcaataaggt 596  Q
    |||||||| |||||||| |||||||||||  |||||||| |||||||||||    
T  221361 ggttattagtgaggaattttagatgggcactaaaatttccttcaataaggt 221311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 546 - 596
Target Start/End: Complemental strand, 46394961 - 46394911
Alignment:
Q  546 ggttattaatgaggaatcttagatgggcaggaaaatttctttcaataaggt 596  Q
    |||||||||||||||||||||| || || | |||||||| |||||||||||    
T  46394961 ggttattaatgaggaatcttaggtgagcggtaaaatttcattcaataaggt 46394911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 611 - 669
Target Start/End: Complemental strand, 52596918 - 52596860
Alignment:
Q  611 agataagatatatcaggatattttagtaatatacttaatttattattgggtatgggtac 669  Q
    ||||||||||||| || |||||||| |||| |||||| |||| ||| ||||||||||||    
T  52596918 agataagatatatgagaatattttaataatttacttattttaatatcgggtatgggtac 52596860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 687 - 735
Target Start/End: Complemental strand, 56543937 - 56543888
Alignment:
Q  687 atcaaatccgtgtccgtatccatataa-taatgggtagtcaaatactcat 735  Q
    ||||||||| |||||||||||||| || |||| |||||||||||||||||    
T  56543937 atcaaatccatgtccgtatccataaaaataataggtagtcaaatactcat 56543888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 94; Significance: 2e-45; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 611 - 740
Target Start/End: Original strand, 49954 - 50083
Alignment:
Q  611 agataagatatatcaggatattttagtaatatacttaatttattattgggtatgggtacccgtgggtatgaatacaatcaaatccgtgtccgtatccata 710  Q
    ||||||||||||  |||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||  || |||||||||||||||||||||||||    
T  49954 agataagatatacaaggatattttagtaatttacttaatttattatcgggtatgagtacccgtgggtatggttataatcaaatccgtgtccgtatccata 50053  T
Q  711 taataatgggtagtcaaatactcatttatt 740  Q
    ||| ||||||||||||||||||||||||||    
T  50054 taaaaatgggtagtcaaatactcatttatt 50083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 2e-42; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 611 - 731
Target Start/End: Complemental strand, 12698782 - 12698663
Alignment:
Q  611 agataagatatatcaggatattttagtaatatacttaatttattattgggtatgggtacccgtgggtatgaatacaatcaaatccgtgtccgtatccata 710  Q
    ||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||| |||| ||||| |||||||||||||||||||||||||||||    
T  12698782 agataagatatataaggatattttagtaatctacttaatttattatcgggtatgggtactcgtgagtatg-atacaatcaaatccgtgtccgtatccata 12698684  T
Q  711 taataatgggtagtcaaatac 731  Q
    ||||||||| |||||||||||    
T  12698683 taataatggatagtcaaatac 12698663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 613 - 731
Target Start/End: Original strand, 15696801 - 15696919
Alignment:
Q  613 ataagatatatcaggatattttagtaatatacttaatttattattgggtatgggtacccgtgggtatgaatacaatcaaatccgtgtccgtatccatata 712  Q
    ||||||||||| ||||||||||||||||  | |||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||| ||||||    
T  15696801 ataagatatataaggatattttagtaattaagttaatttattattgggtatgggtatccgtgggtatggataccatcaaatccgtgtccgtattcatata 15696900  T
Q  713 ataatgggtagtcaaatac 731  Q
    |||||||||||||||||||    
T  15696901 ataatgggtagtcaaatac 15696919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 546 - 740
Target Start/End: Complemental strand, 17841673 - 17841470
Alignment:
Q  546 ggttattaatgaggaatcttagatgggcaggaaaatttctttcaataag--------gttatcaattgggatgagataagatatatcaggatattttagt 637  Q
    |||||||||||||||||||||| ||||| | ||||||||||||||||||         |||   | |  ||| ||||||||||||| | ||||||||| |    
T  17841673 ggttattaatgaggaatcttaggtgggcggtaaaatttctttcaataagataacaactttaagtaataagataagataagatatataaagatattttatt 17841574  T
Q  638 aatatacttaatttattattgggtatgggtacccgt-gggtatgaatacaatcaaatccgtgtccgtatccatataataatgggtagtcaaatactcatt 736  Q
    ||| ||||||||||||||| |||||||||||  ||| |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  17841573 aatttacttaatttattatcgggtatgggtattcgtggggtatgggtacaatcaaatccgtgtccgtatccatataataatgggtagtcaaatactcgtt 17841474  T
Q  737 tatt 740  Q
    ||||    
T  17841473 tatt 17841470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 546 - 733
Target Start/End: Original strand, 15676095 - 15676285
Alignment:
Q  546 ggttattaatgaggaatcttagatgggcaggaaaatttctttcaataaggttatcaatt---gggatgagataagatatatcaggatattttagtaatat 642  Q
    |||||||||||| |||| |||| ||| | | |||||||| ||||||||||| |  | ||   | ||| ||||||||||||| | |||||||||||||| |    
T  15676095 ggttattaatgaagaattttaggtggccggtaaaatttccttcaataaggtaacaactttaagtgataagataagatatataaagatattttagtaattt 15676194  T
Q  643 acttaatttattattgggtatgggtacccgtgggtatgaatacaatcaaatccgtgtccgtatccatataataatgggtagtcaaatactc 733  Q
    |||| ||||||||| |||||||||||| ||||||||||||||||||||||| |||| ||||||| ||||||||||  ||||||||||||||    
T  15676195 acttgatttattatcgggtatgggtactcgtgggtatgaatacaatcaaattcgtgaccgtatctatataataatatgtagtcaaatactc 15676285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 611 - 730
Target Start/End: Complemental strand, 4622567 - 4622448
Alignment:
Q  611 agataagatatatcaggatattttagtaatatacttaatttattattgggtatgggtacccgtgggtatgaatacaatcaaatccgtgtccgtatccata 710  Q
    ||||||| ||||| | |||||||||||||| |||||||||||||||  ||||||||||||||||| |||| |||||||||||| ||||||||||||||||    
T  4622567 agataagttatataacgatattttagtaatttacttaatttattatctggtatgggtacccgtggatatggatacaatcaaattcgtgtccgtatccata 4622468  T
Q  711 taataatgggtagtcaaata 730  Q
    ||||||||| |||| |||||    
T  4622467 taataatggatagtgaaata 4622448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 166 - 302
Target Start/End: Complemental strand, 4623000 - 4622864
Alignment:
Q  166 gatgtcaatgggtacccatggatacagatagtatgatactcgtccccgccacattggataaatatgatacccgtgcctgcctcgtaccctcgtgggtacc 265  Q
    ||||| ||||||||||||| ||||| ||||||||||||| |||| ||||| ||||||||||||||||||| |||  | ||||||||||||||| ||||||    
T  4623000 gatgttaatgggtacccatagatacggatagtatgatacccgtctccgccccattggataaatatgatacacgtatccgcctcgtaccctcgtaggtacc 4622901  T
Q  266 catcatgtggatacccgtgggtattgaggtatccatg 302  Q
    ||  |||||| || |||||||||||||||||| ||||    
T  4622900 cactatgtgggtatccgtgggtattgaggtattcatg 4622864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 390 - 502
Target Start/End: Complemental strand, 17841830 - 17841719
Alignment:
Q  390 aacattcatacataatccattcaaaatttcataaatcatatataattcatagaaaattcatgattcttacataatgcataacatatgtttttaggatgtg 489  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||| ||||  ||||| ||||| ||||||    
T  17841830 aacatccatacataatccattcaaaatttcataaatcatacataatccatataaaattcatgattcttacataatccataggatatg-ttttatgatgtg 17841732  T
Q  490 aatgaagtagaaa 502  Q
    ||| |||| ||||    
T  17841731 aataaagtggaaa 17841719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 164 - 318
Target Start/End: Complemental strand, 17842059 - 17841905
Alignment:
Q  164 gggatgtcaatgggtacccatggatacagatagtatgatactcgtccccgccacattggataaatatgatacccgtgcctgcctcgtaccctcgtgggta 263  Q
    ||||||||||||| ||||||| ||||| ||||||||||||||||||||||||   ||||||||||||||||  ||  || |||  |||||||||  ||||    
T  17842059 gggatgtcaatggatacccatagatacggatagtatgatactcgtccccgccttgttggataaatatgatatacgcacccgccatgtaccctcgctggta 17841960  T
Q  264 cccatcatgtggatacccgtgggtattgaggtatccatgtgtattcatgggtacc 318  Q
    ||||  ||  || || ||||||||||| ||||||||||| |||||||||||||||    
T  17841959 cccactatacgggtatccgtgggtattaaggtatccatgggtattcatgggtacc 17841905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 618 - 694
Target Start/End: Complemental strand, 30953967 - 30953891
Alignment:
Q  618 atatatcaggatattttagtaatatacttaatttattattgggtatgggtacccgtgggtatgaatacaatcaaatc 694  Q
    |||||| || ||| ||||||||| ||||||||||||||| |||||||||||| ||||||||||| ||||||||||||    
T  30953967 atatataagaataatttagtaatttacttaatttattatcgggtatgggtactcgtgggtatgagtacaatcaaatc 30953891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 192 - 298
Target Start/End: Original strand, 15675744 - 15675850
Alignment:
Q  192 gatagtatgatactcgtccccgccacattggataaatatgatacccgtgcctgcctcgtaccctcgtgggtacccatcatgtggatacccgtgggtattg 291  Q
    |||| |||||||| |||| |||||  |||||||||||||||||||||| || ||| ||||||||| |||| |||||  ||| || |||||| ||||||||    
T  15675744 gataatatgatacccgtcaccgccctattggataaatatgatacccgtacccgccccgtaccctcatgggcacccactatgcgggtacccgcgggtattg 15675843  T
Q  292 aggtatc 298  Q
    |||||||    
T  15675844 aggtatc 15675850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 240
Target Start/End: Complemental strand, 12438533 - 12438455
Alignment:
Q  162 tagggatgtcaatgggtacccatggatacagatagtatgatactcgtccccgccacattggataaatatgatacccgtg 240  Q
    |||||||||||||||||| |||||| || || ||||||||||  |||||||| | | ||||||||||||| ||||||||    
T  12438533 tagggatgtcaatgggtatccatgggtataggtagtatgatatccgtccccgtcccgttggataaatatggtacccgtg 12438455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 390 - 435
Target Start/End: Complemental strand, 12699003 - 12698958
Alignment:
Q  390 aacattcatacataatccattcaaaatttcataaatcatatataat 435  Q
    ||||| |||||||||||||||||||||||||||||||||| |||||    
T  12699003 aacatccatacataatccattcaaaatttcataaatcatacataat 12698958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 390 - 435
Target Start/End: Complemental strand, 30954075 - 30954030
Alignment:
Q  390 aacattcatacataatccattcaaaatttcataaatcatatataat 435  Q
    ||||| |||||||||||||||||||||||||| ||||||| |||||    
T  30954075 aacatccatacataatccattcaaaatttcatcaatcatacataat 30954030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 390 - 480
Target Start/End: Complemental strand, 4622782 - 4622693
Alignment:
Q  390 aacattcatacataatccattcaaaatttcataaatcatatataattcatagaaaattcatgattcttacataatgcataacatatgtttt 480  Q
    ||||||||||||||||||||  |||||| | | | || || ||||| |||||| |||||||||||||||| |||| ||||  |||||||||    
T  4622782 aacattcatacataatccatagaaaatt-cgtgattcttacataatccatagataattcatgattcttacctaatccatagaatatgtttt 4622693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 283 - 321
Target Start/End: Complemental strand, 12699120 - 12699082
Alignment:
Q  283 tgggtattgaggtatccatgtgtattcatgggtacccat 321  Q
    |||||||| ||||||||||| ||||||||||||||||||    
T  12699120 tgggtattaaggtatccatgggtattcatgggtacccat 12699082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 3e-41; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 613 - 731
Target Start/End: Original strand, 24735824 - 24735942
Alignment:
Q  613 ataagatatatcaggatattttagtaatatacttaatttattattgggtatgggtacccgtgggtatgaatacaatcaaatccgtgtccgtatccatata 712  Q
    ||||||||||| ||||||||||||||||  | ||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||| ||||||    
T  24735824 ataagatatataaggatattttagtaattaagttaatttattattgggtatgggtacccgtgggtatgggtaccatcaaatccgtgtccgtattcatata 24735923  T
Q  713 ataatgggtagtcaaatac 731  Q
    |||||||||||||||||||    
T  24735924 ataatgggtagtcaaatac 24735942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 613 - 731
Target Start/End: Original strand, 29839766 - 29839884
Alignment:
Q  613 ataagatatatcaggatattttagtaatatacttaatttattattgggtatgggtacccgtgggtatgaatacaatcaaatccgtgtccgtatccatata 712  Q
    ||||||||||| ||||||||||||||||  | ||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||| ||||||    
T  29839766 ataagatatataaggatattttagtaattaagttaatttattattgggtatgggtacccgtgggtatgggtaccatcaaatccgtgtccgtattcatata 29839865  T
Q  713 ataatgggtagtcaaatac 731  Q
    |||||||||||||||||||    
T  29839866 ataatgggtagtcaaatac 29839884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 611 - 738
Target Start/End: Original strand, 26042018 - 26042145
Alignment:
Q  611 agataagatatatcaggatattttagtaatatacttaatttattattgggtatgggtacccgtgggtatgaatacaatcaaatccgtgtccgtatccata 710  Q
    ||||||||||||| |||||||||||||| | || |||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||| ||||    
T  26042018 agataagatatataaggatattttagtagtttagttaatttattatcgggtatgggtacccgtggatatggatacaatcaaatccgtgtccgtattcata 26042117  T
Q  711 taataatgggtagtcaaatactcattta 738  Q
    ||| ||||| ||||||||||||| ||||    
T  26042118 taacaatggatagtcaaatactcgttta 26042145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 630 - 740
Target Start/End: Original strand, 44791422 - 44791532
Alignment:
Q  630 attttagtaatatacttaatttattattgggtatgggtacccgtgggtatgaatacaatcaaatccgtgtccgtatccatataataatgggtagtcaaat 729  Q
    ||||||||||| |  |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||    
T  44791422 attttagtaatttgtttaatttattatcgggtatgggtacccgtgggtatggatacaatcaaatccgtgtccatatccatataataatggatagtcaaat 44791521  T
Q  730 actcatttatt 740  Q
    || ||||||||    
T  44791522 acccatttatt 44791532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 611 - 740
Target Start/End: Complemental strand, 3858127 - 3857998
Alignment:
Q  611 agataagatatatcaggatattttagtaatatacttaatttattattgggtatgggtacccgtgggtatgaatacaatcaaatccgtgtccgtatccata 710  Q
    ||||||||||||| ||||||||||| |||| ||||||||||||||| || | |||||||| |||||||||  ||| |||||||| |||||||||||||||    
T  3858127 agataagatatataaggatattttaataatttacttaatttattatcggatttgggtacctgtgggtatgggtactatcaaatctgtgtccgtatccata 3858028  T
Q  711 taataatgggtagtcaaatactcatttatt 740  Q
    ||||||||||||||||||||| | ||||||    
T  3858027 taataatgggtagtcaaatacccgtttatt 3857998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 161 - 302
Target Start/End: Complemental strand, 3858576 - 3858435
Alignment:
Q  161 gtagggatgtcaatgggtacccatggatacagatagtatgatactcgtccccgccacattggataaatatgatacccgtgcctgcctcgtaccctcgtgg 260  Q
    |||||||||||||||||||||||||| |||  |||||||||||| ||||||| || | ||||||||||||| || ||||||| ||| |||||||||||||    
T  3858576 gtagggatgtcaatgggtacccatgggtacgaatagtatgatacacgtccccaccccgttggataaatatgttatccgtgcccgccccgtaccctcgtgg 3858477  T
Q  261 gtacccatcatgtggatacccgtgggtattgaggtatccatg 302  Q
    |||| ||  ||||||  |||||||||||||||||||||||||    
T  3858476 gtacgcactatgtgggcacccgtgggtattgaggtatccatg 3858435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 160 - 321
Target Start/End: Original strand, 29839196 - 29839357
Alignment:
Q  160 agtagggatgtcaatgggtacccatggatacagatagtatgatactcgtccccgccacattggataaatatgatacccgtgcctgcctcgtaccctcgtg 259  Q
    ||||||||||||||||| |||||||||| || ||||||||||||| |||  ||||  | ||||||||| ||||||||| |||| ||| ||||||| | ||    
T  29839196 agtagggatgtcaatggatacccatggacacggatagtatgatacccgtgtccgctccgttggataaacatgatacccatgcccgccccgtacccacatg 29839295  T
Q  260 ggtacccatcatgtggatacccgtgggtattgaggtatccatgtgtattcatgggtacccat 321  Q
    ||||||||| |||||| |||||||||||||||| |||| |||| |||||| |||||||||||    
T  29839296 ggtacccattatgtgggtacccgtgggtattgaagtatgcatgggtattcgtgggtacccat 29839357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 390 - 511
Target Start/End: Original strand, 44791143 - 44791263
Alignment:
Q  390 aacattcatacataatccattcaaaatttcataaatcatatataattcatagaaaattcatgattcttacataatgcataacatatgtttttaggatgtg 489  Q
    ||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  ||||| ||||| ||||||    
T  44791143 aacatccatacataatcaattcaaaatttcataaatcatacataattcatagaaaattcatgattcttacataatgcatatgatatg-ttttatgatgtg 44791241  T
Q  490 aatgaagtagaaacagtaaact 511  Q
    ||||||||  |||| |||||||    
T  44791242 aatgaagtgaaaacggtaaact 44791263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 162 - 321
Target Start/End: Original strand, 24735414 - 24735573
Alignment:
Q  162 tagggatgtcaatgggtacccatggatacagatagtatgatactcgtccccgccacattggataaatatgatacccgtgcctgcctcgtaccctcgtggg 261  Q
    ||||||||||||||| |||||||||| || ||||||||||||| ||| |||||| | ||||||||| ||||||||| |||| ||| |||| |  | ||||    
T  24735414 tagggatgtcaatggatacccatggacacggatagtatgatacccgtgcccgccccgttggataaacatgatacccatgcccgccccgtatctacatggg 24735513  T
Q  262 tacccatcatgtggatacccgtgggtattgaggtatccatgtgtattcatgggtacccat 321  Q
    || |||| |||||| ||||| |||||||||| ||||||||| |||||| |||||||||||    
T  24735514 tatccattatgtgggtacccatgggtattgaagtatccatgggtattcgtgggtacccat 24735573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 161 - 321
Target Start/End: Original strand, 44790915 - 44791075
Alignment:
Q  161 gtagggatgtcaatgggtacccatggatacagatagtatgatactcgtccccgccacattggataaatatgatacccgtgcctgcctcgtaccctcgtgg 260  Q
    |||||||||||||||||||||||||| ||| ||||||||||||| |||||||||| | ||| ||||| |||||||  ||| | ||| ||||||||| |||    
T  44790915 gtagggatgtcaatgggtacccatgggtacggatagtatgatacccgtccccgccccgttgtataaaaatgatacatgtgtccgccccgtaccctcatgg 44791014  T
Q  261 gtacccatcatgtggatacccgtgggtattgaggtatccatgtgtattcatgggtacccat 321  Q
    | |||||  |||  | || ||||||||||||||||||||||| ||||| ||||||| ||||    
T  44791015 gcacccactatgcaggtatccgtgggtattgaggtatccatgggtatttatgggtatccat 44791075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 393 - 497
Target Start/End: Complemental strand, 29808364 - 29808261
Alignment:
Q  393 attcatacataatccattcaaaatttcataaatcatatataattcatagaaaattcatgattcttacataatgcataacatatgtttttaggatgtgaat 492  Q
    |||||||||||||||||| |||||||||||||||||| |||||  ||||||||||||||||| ||||||||| ||||  ||||| ||||| |||||||||    
T  29808364 attcatacataatccatttaaaatttcataaatcatacataatcaatagaaaattcatgatttttacataatccataggatatg-ttttatgatgtgaat 29808266  T
Q  493 gaagt 497  Q
    |||||    
T  29808265 gaagt 29808261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 162 - 302
Target Start/End: Complemental strand, 29808579 - 29808439
Alignment:
Q  162 tagggatgtcaatgggtacccatggatacagatagtatgatactcgtccccgccacattggataaatatgatacccgtgcctgcctcgtaccctcgtggg 261  Q
    |||| ||||||| |||||||||| | ||| |||||||||||||| ||||||||| | ||||||||| ||||||| |||| ||||||| |||||| |||||    
T  29808579 taggaatgtcaacgggtacccataggtacggatagtatgatactagtccccgccccgttggataaaaatgatactcgtgtctgcctcataccctagtggg 29808480  T
Q  262 tacccatcatgtggatacccgtgggtattgaggtatccatg 302  Q
    ||||||  ||| |  ||||| | ||||||||||||||||||    
T  29808479 tacccactatgcgagtacccataggtattgaggtatccatg 29808439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 390 - 503
Target Start/End: Complemental strand, 3858352 - 3858240
Alignment:
Q  390 aacattcatacataatccattcaaaatttcataaatcatatataattcatagaaaattcatgattcttacataatgcataacatatgtttttaggatgtg 489  Q
    ||||| ||||| ||||| |||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||| |||   ||||  ||||| ||||||    
T  3858352 aacatccatacgtaatctattcaaaatttcataaatcatacataatccatataaaattcatgattcttacataatccatttgatat-attttatgatgtg 3858254  T
Q  490 aatgaagtagaaac 503  Q
    ||| ||||||||||    
T  3858253 aataaagtagaaac 3858240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 390 - 458
Target Start/End: Original strand, 23209893 - 23209960
Alignment:
Q  390 aacattcatacataatccattcaaaatttcataaatcatatataattcatagaaaattcatgattctta 458  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||||| ||| |||||||||||||    
T  23209893 aacattcatacataattcattcaaa-tttcataaatcatatataattcatacaaatttcatgattctta 23209960  T

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Target: chr3; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 674 - 740
Target Start/End: Complemental strand, 29808090 - 29808024
Alignment:
Q  674 gggtatgaatacaatcaaatccgtgtccgtatccatataataatgggtagtcaaatactcatttatt 740  Q
    |||||||  ||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||    
T  29808090 gggtatgggtacaatcaaattcgtgtccgtatccatataataatgggtagtcaaacacccatttatt 29808024  T

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Target: chr3; HSP #16
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 396 - 469
Target Start/End: Complemental strand, 34296777 - 34296705
Alignment:
Q  396 catacataatccattcaaaatttcataaatcatatataattcatagaaaattcatgattcttacataatgcata 469  Q
    |||| ||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||| |||||| ||||    
T  34296777 catatataatccattcaaaatttcataaatcatacataattcgtag-aaattcatgattctttcataatccata 34296705  T

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Target: chr3; HSP #17
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 390 - 461
Target Start/End: Original strand, 12277282 - 12277352
Alignment:
Q  390 aacattcatacataatccattcaaaatttcataaatcatatataattcatagaaaattcatgattcttacat 461  Q
    ||||| |||||| |||||||||||| |||||||||||||| |||||||||| |||||||| |||||||||||    
T  12277282 aacatccatacagaatccattcaaa-tttcataaatcatacataattcatacaaaattcacgattcttacat 12277352  T

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Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 390 - 469
Target Start/End: Original strand, 24735649 - 24735724
Alignment:
Q  390 aacattcatacataatccattcaaaatttcataaatcatatataattcatagaaaattcatgattcttacataatgcata 469  Q
    ||||| ||||||||||| |||||||||||||||||||    ||||| |||||||||||||| ||||||||||||| ||||    
T  24735649 aacatccatacataatctattcaaaatttcataaatc----ataatccatagaaaattcataattcttacataattcata 24735724  T

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Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 390 - 469
Target Start/End: Original strand, 29839433 - 29839508
Alignment:
Q  390 aacattcatacataatccattcaaaatttcataaatcatatataattcatagaaaattcatgattcttacataatgcata 469  Q
    ||||| ||||||||||| |||||||||||||||||||    ||||| |||||||||||||| ||||||||||||| ||||    
T  29839433 aacatccatacataatctattcaaaatttcataaatc----ataatccatagaaaattcataattcttacataattcata 29839508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 173 - 267
Target Start/End: Complemental strand, 34296990 - 34296896
Alignment:
Q  173 atgggtacccatggatacagatagtatgatactcgtccccgccacattggataaatatgatacccgtgcctgcctcgtaccctcgtgggtaccca 267  Q
    ||||||||||| || ||||||  ||||||||  |||| ||||| | ||| |||||||||||||||||||  ||| ||||||||||||||||||||    
T  34296990 atgggtacccacgggtacagacggtatgatatccgtctccgccccgttgaataaatatgatacccgtgctcgccccgtaccctcgtgggtaccca 34296896  T

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Target: chr3; HSP #21
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 231
Target Start/End: Original strand, 6418727 - 6418796
Alignment:
Q  162 tagggatgtcaatgggtacccatggatacagatagtatgatactcgtccccgccacattggataaatatg 231  Q
    |||||||||||||||||| |||||| |||||||||||||||| ||||| ||||| | || ||||||||||    
T  6418727 tagggatgtcaatgggtatccatgggtacagatagtatgatattcgtcaccgccccgttcgataaatatg 6418796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 162 - 234
Target Start/End: Complemental strand, 42875965 - 42875893
Alignment:
Q  162 tagggatgtcaatgggtacccatggatacagatagtatgatactcgtccccgccacattggataaatatgata 234  Q
    |||||||||||||||||||| |||| ||||||||||||||||| |||| || || | ||| ||||||||||||    
T  42875965 tagggatgtcaatgggtacctatgggtacagatagtatgatacccgtctccaccccgttgaataaatatgata 42875893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 627 - 731
Target Start/End: Original strand, 52689604 - 52689708
Alignment:
Q  627 gatattttagtaatatacttaatttattattgggtatgggtacccgtgggtatgaatacaatcaaatccgtgtccgtatccatataataatgggtagtca 726  Q
    |||||||||||||| |||||||||||||||  | |||||| ||| ||||| |  | ||  |||||||| |||||| |||||||| |||||||| ||||||    
T  52689604 gatattttagtaatttacttaatttattatcagatatgggcacctgtgggcacaagtatcatcaaatctgtgtccatatccataaaataatggctagtca 52689703  T
Q  727 aatac 731  Q
    |||||    
T  52689704 aatac 52689708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 397 - 460
Target Start/End: Original strand, 26041805 - 26041868
Alignment:
Q  397 atacataatccattcaaaatttcataaatcatatataattcatagaaaattcatgattcttaca 460  Q
    ||||||||| ||||| ||||||||||||||||| ||||| |||||||||||||| || ||||||    
T  26041805 atacataattcattctaaatttcataaatcatacataatccatagaaaattcattatccttaca 26041868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 159 - 242
Target Start/End: Original strand, 37826881 - 37826964
Alignment:
Q  159 gagtagggatgtcaatgggtacccatggatacagatagtatgatactcgtccccgccacattggataaatatgatacccgtgcc 242  Q
    ||||||||||||| ||||||| |||||| ||| | ||||||||||  |||||||||| | |||||||||| || ||||||||||    
T  37826881 gagtagggatgtcgatgggtatccatgggtacgggtagtatgatatccgtccccgccccgttggataaatttggtacccgtgcc 37826964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 398 - 463
Target Start/End: Complemental strand, 21983315 - 21983251
Alignment:
Q  398 tacataatccattcaaaatttcataaatcatatataattcatagaaaattcatgattcttacataa 463  Q
    ||||||||| ||||||| ||||||||||||||| |||| |||| ||||||||||||||||| ||||    
T  21983315 tacataatctattcaaa-tttcataaatcatatctaatccatacaaaattcatgattcttatataa 21983251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 408 - 469
Target Start/End: Complemental strand, 42875783 - 42875722
Alignment:
Q  408 attcaaaatttcataaatcatatataattcatagaaaattcatgattcttacataatgcata 469  Q
    |||||||||||||| ||||||| || ||  ||||||||||||||||||||||||||| ||||    
T  42875783 attcaaaatttcatcaatcatacattatcaatagaaaattcatgattcttacataatccata 42875722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 390 - 469
Target Start/End: Original strand, 36544307 - 36544385
Alignment:
Q  390 aacattcatacataatccattcaaaatttcataaatcatatataattcatagaaaattcatgattcttacataatgcata 469  Q
    ||||| |||||| |||||||| ||| |||| |||||||||  |||| |||| ||||||||||||||||||||||| ||||    
T  36544307 aacatccatacaaaatccattgaaa-tttcttaaatcatacctaatccatacaaaattcatgattcttacataattcata 36544385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 390 - 469
Target Start/End: Complemental strand, 36564017 - 36563939
Alignment:
Q  390 aacattcatacataatccattcaaaatttcataaatcatatataattcatagaaaattcatgattcttacataatgcata 469  Q
    ||||| |||||| |||||||| ||| |||| |||||||||  |||| |||| ||||||||||||||||||||||| ||||    
T  36564017 aacatccatacaaaatccattgaaa-tttcttaaatcatacctaatccatacaaaattcatgattcttacataattcata 36563939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 626 - 740
Target Start/End: Original strand, 17612652 - 17612766
Alignment:
Q  626 ggatattttagtaatatacttaatttattattgggtatgggtacccgtgggtatgaatacaatcaaatccgtgtccgtatccatataataatgggtagtc 725  Q
    ||||||||||||||| ||||| | ||||||  ||||| || ||||||  || | |  ||  ||||||||||| ||||| || ||| |||||||||||||     
T  17612652 ggatattttagtaatttacttcacttattaacgggtacggatacccgcaggcacgggtatcatcaaatccgtatccgtgtctataaaataatgggtagtt 17612751  T
Q  726 aaatactcatttatt 740  Q
    |||||||||||||||    
T  17612752 aaatactcatttatt 17612766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 683 - 724
Target Start/End: Original strand, 24435270 - 24435311
Alignment:
Q  683 tacaatcaaatccgtgtccgtatccatataataatgggtagt 724  Q
    |||||||||||  |||||||||||||||||||||||||||||    
T  24435270 tacaatcaaatttgtgtccgtatccatataataatgggtagt 24435311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 231
Target Start/End: Complemental strand, 26898048 - 26897979
Alignment:
Q  162 tagggatgtcaatgggtacccatggatacagatagtatgatactcgtccccgccacattggataaatatg 231  Q
    |||||| ||||||||||| |||||| ||| ||||||||||||   ||||||||| | |||||||||||||    
T  26898048 tagggaagtcaatgggtatccatggttacggatagtatgatatatgtccccgccccgttggataaatatg 26897979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 625 - 665
Target Start/End: Original strand, 23217137 - 23217177
Alignment:
Q  625 aggatattttagtaatatacttaatttattattgggtatgg 665  Q
    |||||||||||||||| ||||||||||||||| ||||||||    
T  23217137 aggatattttagtaatttacttaatttattatcgggtatgg 23217177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 162 - 265
Target Start/End: Original strand, 52688937 - 52689040
Alignment:
Q  162 tagggatgtcaatgggtacccatggatacag-atagtatgatactcgtccccgccacattggataaatatgatacccgtgcctgcctcgtaccctcgtgg 260  Q
    ||||||||||||||| || |||||||||||  ||||||||||||   |||| ||||| |||||||||||||||||  ||| ||||| | |||||  ||||    
T  52688937 tagggatgtcaatggatatccatggatacattatagtatgatacctatccc-gccacgttggataaatatgatacatgtgtctgccccatacccgtgtgg 52689035  T
Q  261 gtacc 265  Q
    |||||    
T  52689036 gtacc 52689040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 611 - 653
Target Start/End: Complemental strand, 29808137 - 29808095
Alignment:
Q  611 agataagatatatcaggatattttagtaatatacttaatttat 653  Q
    ||||||||||||  |||||||||||||||| ||||||||||||    
T  29808137 agataagatatacaaggatattttagtaatttacttaatttat 29808095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 618 - 671
Target Start/End: Original strand, 1659754 - 1659807
Alignment:
Q  618 atatatcaggatattttagtaatatacttaatttattattgggtatgggtaccc 671  Q
    |||||| |||||||||||| ||| ||||||||||||||| |  |||||||||||    
T  1659754 atatataaggatattttagcaatttacttaatttattatcgaatatgggtaccc 1659807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 626 - 659
Target Start/End: Original strand, 6419369 - 6419402
Alignment:
Q  626 ggatattttagtaatatacttaatttattattgg 659  Q
    ||||||||||||||| ||||||||||||||||||    
T  6419369 ggatattttagtaatttacttaatttattattgg 6419402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 628 - 673
Target Start/End: Complemental strand, 26897335 - 26897290
Alignment:
Q  628 atattttagtaatatacttaatttattattgggtatgggtacccgt 673  Q
    ||||||||||||| |||||||||||||| || |||||| |||||||    
T  26897335 atattttagtaatttacttaatttattaatgagtatggatacccgt 26897290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 3e-41; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 613 - 731
Target Start/End: Complemental strand, 29268003 - 29267885
Alignment:
Q  613 ataagatatatcaggatattttagtaatatacttaatttattattgggtatgggtacccgtgggtatgaatacaatcaaatccgtgtccgtatccatata 712  Q
    ||||||||||| ||||||||||||||||  | ||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||| ||||||    
T  29268003 ataagatatataaggatattttagtaattaagttaatttattattgggtatgggtacccgtgggtatgggtaccatcaaatccgtgtccgtattcatata 29267904  T
Q  713 ataatgggtagtcaaatac 731  Q
    |||||||||||||||||||    
T  29267903 ataatgggtagtcaaatac 29267885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 613 - 740
Target Start/End: Complemental strand, 3303125 - 3302998
Alignment:
Q  613 ataagatatatcaggatattttagtaatatacttaatttattattgggtatgggtacccgtgggtatgaatacaatcaaatccgtgtccgtatccatata 712  Q
    ||||||||||| ||||||||||||| || || ||||||||| || |||||||||||| |||||||||| ||||| |||||||||||||||| | ||||||    
T  3303125 ataagatatataaggatattttagtcatttatttaatttatcatcgggtatgggtactcgtgggtatggatacagtcaaatccgtgtccgttttcatata 3303026  T
Q  713 ataatgggtagtcaaatactcatttatt 740  Q
    ||||||| ||||||||||| ||||||||    
T  3303025 ataatggatagtcaaatacccatttatt 3302998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 611 - 731
Target Start/End: Complemental strand, 16543753 - 16543633
Alignment:
Q  611 agataagatatatcaggatattttagtaatatacttaatttattattgggtatgggtacccgtgggtatgaatacaatcaaatccgtgtccgtatccata 710  Q
    ||||||||||||| | |||||| ||||||| ||||||||||||||| ||||||| |||||| || ||||| ||||| |||||| |||||||||||| |||    
T  16543753 agataagatatataacgatattgtagtaatttacttaatttattatcgggtatgagtacccatgtgtatggatacagtcaaattcgtgtccgtatctata 16543654  T
Q  711 taataatgggtagtcaaatac 731  Q
    ||||||||| |||||||||||    
T  16543653 taataatggatagtcaaatac 16543633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 611 - 731
Target Start/End: Complemental strand, 17145213 - 17145093
Alignment:
Q  611 agataagatatatcaggatattttagtaatatacttaatttattattgggtatgggtacccgtgggtatgaatacaatcaaatccgtgtccgtatccata 710  Q
    |||| |||||||| | |||||||||||||| ||||||| ||| ||| | |||||| ||||| ||||| || ||||||| |||||||||| ||||||||||    
T  17145213 agattagatatataaagatattttagtaatttacttaaattaatatcgagtatggctacccatgggtttggatacaattaaatccgtgttcgtatccata 17145114  T
Q  711 taataatgggtagtcaaatac 731  Q
    |||||||||||||||||||||    
T  17145113 taataatgggtagtcaaatac 17145093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 390 - 511
Target Start/End: Complemental strand, 16543980 - 16543860
Alignment:
Q  390 aacattcatacataatccattcaaaatttcataaatcatatataattcatagaaaattcatgattcttacataatgcataacatatgtttttaggatgtg 489  Q
    ||||| |||||||||||||||||||||||||||||||| | || |  |||||||||||||||||||||||||||| ||||  ||||| ||||| ||| ||    
T  16543980 aacatccatacataatccattcaaaatttcataaatcacacattacacatagaaaattcatgattcttacataatccataggatatg-ttttatgatttg 16543882  T
Q  490 aatgaagtagaaacagtaaact 511  Q
    |||||||| ||||| |||||||    
T  16543881 aatgaagtggaaacggtaaact 16543860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 390 - 503
Target Start/End: Complemental strand, 51004239 - 51004127
Alignment:
Q  390 aacattcatacataatccattcaaaatttcataaatcatatataattcatagaaaattcatgattcttacataatgcataacatatgtttttaggatgtg 489  Q
    ||||| ||||||||||||||||| |||||||||||||||| ||||| |||| ||||||||||||||||||||||| ||||  ||| | ||||| ||||||    
T  51004239 aacatccatacataatccattcagaatttcataaatcatacataatccatataaaattcatgattcttacataatccataggatacg-ttttatgatgtg 51004141  T
Q  490 aatgaagtagaaac 503  Q
    |||||||| |||||    
T  51004140 aatgaagtggaaac 51004127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 162 - 321
Target Start/End: Complemental strand, 16544213 - 16544054
Alignment:
Q  162 tagggatgtcaatgggtacccatggatacagatagtatgatactcgtccccgccacattggataaatatgatacccgtgcctgcctcgtaccctcgtggg 261  Q
    ||||||||||||||||| ||||||| ||||||||||||||||| |||||||||| | ||| ||| |||||||||||||  | ||| |||||||| |||||    
T  16544213 tagggatgtcaatgggttcccatgggtacagatagtatgatacccgtccccgccccgttgtatagatatgatacccgtatccgccccgtacccttgtggg 16544114  T
Q  262 tacccatcatgtggatacccgtgggtattgaggtatccatgtgtattcatgggtacccat 321  Q
    || |||  ||  || ||||| ||| |||| || ||| |||| |||||||||| |||||||    
T  16544113 tatccactatacgggtacccatggatattaagatattcatgggtattcatggatacccat 16544054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 162 - 263
Target Start/End: Complemental strand, 12417551 - 12417450
Alignment:
Q  162 tagggatgtcaatgggtacccatggatacagatagtatgatactcgtccccgccacattggataaatatgatacccgtgcctgcctcgtaccctcgtggg 261  Q
    ||||||||||||||| ||| ||||||||||||| ||||||||||||| || ||| | |||||||||||||||||||||| | ||  |||| |||||||||    
T  12417551 tagggatgtcaatggatactcatggatacagatcgtatgatactcgttcctgccccgttggataaatatgatacccgtgtccgctccgtatcctcgtggg 12417452  T
Q  262 ta 263  Q
    ||    
T  12417451 ta 12417450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 390 - 464
Target Start/End: Complemental strand, 3303388 - 3303314
Alignment:
Q  390 aacattcatacataatccattcaaaatttcataaatcatatataattcatagaaaattcatgattcttacataat 464  Q
    ||||| |||||||||||||||| |||||||| |||||||| ||||| |||||||||||||||||| |||||||||    
T  3303388 aacatccatacataatccattccaaatttcacaaatcatacataatccatagaaaattcatgatttttacataat 3303314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 627 - 731
Target Start/End: Complemental strand, 12417071 - 12416968
Alignment:
Q  627 gatattttagtaatatacttaatttattattgggtatgggtacccgtgggtatgaatacaatcaaatccgtgtccgtatccatataataatgggtagtca 726  Q
    |||||||||||||| ||||||||||||||| || ||||| ||  |||||  |||| |||||||||||| ||||  ||||||||||||||||| |||||||    
T  12417071 gatattttagtaatttacttaatttattatcggatatggatattcgtggc-atgagtacaatcaaatctgtgtttgtatccatataataatgagtagtca 12416973  T
Q  727 aatac 731  Q
    |||||    
T  12416972 aatac 12416968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 167 - 302
Target Start/End: Complemental strand, 17145575 - 17145440
Alignment:
Q  167 atgtcaatgggtacccatggatacagatagtatgatactcgtccccgccacattggataaatatgatacccgtgcctgcctcgtaccctcgtgggtaccc 266  Q
    |||||||||| || |||||| ||| ||||||||||||| |||| ||||  | || ||||||||| ||||||||||| | | | |||| ||||||||||||    
T  17145575 atgtcaatggatatccatgggtacggatagtatgatacccgtctccgctccgttagataaatataatacccgtgcccgtcccataccgtcgtgggtaccc 17145476  T
Q  267 atcatgtggatacccgtgggtattgaggtatccatg 302  Q
    |  ||| || |||| ||||||||||| |||||||||    
T  17145475 actatgcgggtacctgtgggtattgaagtatccatg 17145440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 223 - 321
Target Start/End: Complemental strand, 3303554 - 3303456
Alignment:
Q  223 ataaatatgatacccgtgcctgcctcgtaccctcgtgggtacccatcatgtggatacccgtgggtattgaggtatccatgtgtattcatgggtacccat 321  Q
    |||||||||||||||||||  ||   ||| ||||||||||| |||  ||| || || ||||||||||||||||||||||| ||||||||||||||||||    
T  3303554 ataaatatgatacccgtgctcgcacagtatcctcgtgggtatccactatgcgggtatccgtgggtattgaggtatccatgggtattcatgggtacccat 3303456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 396 - 469
Target Start/End: Complemental strand, 29268375 - 29268306
Alignment:
Q  396 catacataatccattcaaaatttcataaatcatatataattcatagaaaattcatgattcttacataatgcata 469  Q
    ||||||||||| |||||||||||||||||||    ||||| |||||||||||||| ||||||||||||| ||||    
T  29268375 catacataatctattcaaaatttcataaatc----ataatccatagaaaattcataattcttacataattcata 29268306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 160 - 252
Target Start/End: Complemental strand, 49382966 - 49382874
Alignment:
Q  160 agtagggatgtcaatgggtacccatggatacagatagtatgatactcgtccccgccacattggataaatatgatacccgtgcctgcctcgtac 252  Q
    ||||||||| |||||| ||| |||||| |||| ||||||||||||||| ||| ||| | || |||||||||||||| |||| ||||| |||||    
T  49382966 agtagggatatcaatgagtatccatgggtacatatagtatgatactcgcccctgccccgttagataaatatgatacacgtgtctgccccgtac 49382874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 674 - 730
Target Start/End: Complemental strand, 51003999 - 51003943
Alignment:
Q  674 gggtatgaatacaatcaaatccgtgtccgtatccatataataatgggtagtcaaata 730  Q
    ||||||| ||||||||||||  |||||||||||||||||||||||| ||||||||||    
T  51003999 gggtatgtatacaatcaaatttgtgtccgtatccatataataatggatagtcaaata 51003943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 401 - 464
Target Start/End: Complemental strand, 12417315 - 12417252
Alignment:
Q  401 ataatccattcaaaatttcataaatcatatataattcatagaaaattcatgattcttacataat 464  Q
    |||||||||||||||||| || ||||||| ||||| ||||||||||||| ||| ||||||||||    
T  12417315 ataatccattcaaaattttatcaatcatacataatccatagaaaattcacgatgcttacataat 12417252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 398 - 461
Target Start/End: Original strand, 24536028 - 24536090
Alignment:
Q  398 tacataatccattcaaaatttcataaatcatatataattcatagaaaattcatgattcttacat 461  Q
    |||||||| |||||||| |||||||||||||| |||||||||| ||||| ||||||||||||||    
T  24536028 tacataattcattcaaa-tttcataaatcataaataattcatacaaaatccatgattcttacat 24536090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 628 - 731
Target Start/End: Original strand, 29171863 - 29171964
Alignment:
Q  628 atattttagtaatatacttaatttattattgggtatgggtacccgtgggtatgaatacaatcaaatccgtgtccgtatccatataataatgggtagtcaa 727  Q
    |||||||| |||| || ||||||| |||| ||||||||||||||||||| ||| ||||||||||||| ||||  ||||  ||||||||| ||||| ||||    
T  29171863 atattttaataattta-ttaatttgttatcgggtatgggtacccgtgggaatggatacaatcaaatctgtgtatgtat-aatataataaagggtaatcaa 29171960  T
Q  728 atac 731  Q
    ||||    
T  29171961 atac 29171964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 188 - 300
Target Start/End: Original strand, 23296792 - 23296905
Alignment:
Q  188 tacagatagtatgatactcgtccccgccacattggataaatatgatacccgtgcctgcctcgtaccctcgtgggtacccatcatgtggat-acccgtggg 286  Q
    |||| ||||||||||||||||||||| | ||||||||||||||||||| | || |  |||||||| |  |||||||| ||  ||  || | |||||||||    
T  23296792 tacaaatagtatgatactcgtccccgactcattggataaatatgatactcctgtccacctcgtacacatgtgggtactcactatacgggtaacccgtggg 23296891  T
Q  287 tattgaggtatcca 300  Q
    ||||||||||||||    
T  23296892 tattgaggtatcca 23296905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 222 - 302
Target Start/End: Complemental strand, 51004392 - 51004312
Alignment:
Q  222 gataaatatgatacccgtgcctgcctcgtaccctcgtgggtacccatcatgtggatacccgtgggtattgaggtatccatg 302  Q
    ||||||||||||||||||||  |||||||||| | |||||||||||  ||| || || ||| || ||||||||||||||||    
T  51004392 gataaatatgatacccgtgctcgcctcgtacctttgtgggtacccactatgcgggtatccgcggatattgaggtatccatg 51004312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 404 - 454
Target Start/End: Original strand, 29171619 - 29171669
Alignment:
Q  404 atccattcaaaatttcataaatcatatataattcatagaaaattcatgatt 454  Q
    |||||||||||||||||||| ||||| |||||  |||||||||||||||||    
T  29171619 atccattcaaaatttcataactcatacataatctatagaaaattcatgatt 29171669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 10193266 - 10193311
Alignment:
Q  222 gataaatatgatacccgtgcctgcctcgtaccctcgtgggtaccca 267  Q
    ||||||||||||| ||||||| ||| ||||||||||||||||||||    
T  10193266 gataaatatgatatccgtgcccgccccgtaccctcgtgggtaccca 10193311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 625 - 669
Target Start/End: Complemental strand, 17586187 - 17586143
Alignment:
Q  625 aggatattttagtaatatacttaatttattattgggtatgggtac 669  Q
    ||||||||||||||||||| |||||||||||| |||||| |||||    
T  17586187 aggatattttagtaatatatttaatttattatcgggtataggtac 17586143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 166 - 254
Target Start/End: Complemental strand, 29268585 - 29268497
Alignment:
Q  166 gatgtcaatgggtacccatggatacagatagtatgatactcgtccccgccacattggataaatatgatacccgtgcctgcctcgtaccc 254  Q
    ||||||||||| |||||||||| || |||| |||||||| |||  |||||   ||||||||| ||||||||| |||| ||| |||||||    
T  29268585 gatgtcaatggatacccatggacacggataatatgatacccgtgtccgccctgttggataaacatgatacccatgcccgccccgtaccc 29268497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 156 - 242
Target Start/End: Complemental strand, 44344815 - 44344729
Alignment:
Q  156 cacgagtagggatgtcaatgggtacccatggatacagatagtatgatactcgtccccgccacattggataaatatgatacccgtgcc 242  Q
    |||| ||||||||||||||| ||| |||||| ||| | ||||||||||   |||| |||| | |||||||||||||  |||||||||    
T  44344815 cacgtgtagggatgtcaatgagtatccatgggtacgggtagtatgatatctgtcctcgccccgttggataaatatggaacccgtgcc 44344729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 242
Target Start/End: Original strand, 18523928 - 18524004
Alignment:
Q  165 ggatgtcaatgggtacccatggatacagatagtatgatactcgtccccgccacattggataaatatgatacccgtgcc 242  Q
    ||||||||||||||| |||| | || ||||||||||||| ||||||| || |  ||||| |||||| |||||||||||    
T  18523928 ggatgtcaatgggtatccataggtaaagatagtatgata-tcgtccctgctatgttggacaaatatcatacccgtgcc 18524004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 6e-39; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 613 - 731
Target Start/End: Original strand, 33359412 - 33359530
Alignment:
Q  613 ataagatatatcaggatattttagtaatatacttaatttattattgggtatgggtacccgtgggtatgaatacaatcaaatccgtgtccgtatccatata 712  Q
    ||||||||||| |||||||||||||||| |||||||| ||||||  |||||||||| ||||||||||| ||| ||||||||||||| |||||||||||||    
T  33359412 ataagatatataaggatattttagtaatttacttaatatattatcaggtatgggtatccgtgggtatggatataatcaaatccgtgcccgtatccatata 33359511  T
Q  713 ataatgggtagtcaaatac 731  Q
    |||||||||||||||||||    
T  33359512 ataatgggtagtcaaatac 33359530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 162 - 321
Target Start/End: Complemental strand, 41288275 - 41288116
Alignment:
Q  162 tagggatgtcaatgggtacccatggatacagatagtatgatactcgtccccgccacattggataaatatgatacccgtgcctgcctcgtaccctcgtggg 261  Q
    ||||||||||||||| |||||||||| || ||||||||||||| ||| |||||| | ||||||||| ||||||||| |||| ||| | ||||| | ||||    
T  41288275 tagggatgtcaatggatacccatggacacggatagtatgatacccgtgcccgccccgttggataaacatgatacccatgcccgccccttacccacatggg 41288176  T
Q  262 tacccatcatgtggatacccgtgggtattgaggtatccatgtgtattcatgggtacccat 321  Q
    ||||||| || ||| |||||| ||||||||| ||||||||| |||||| |||||||||||    
T  41288175 tacccattatatgggtacccgcgggtattgaagtatccatgggtattcgtgggtacccat 41288116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 611 - 733
Target Start/End: Original strand, 6801431 - 6801553
Alignment:
Q  611 agataagatatatcaggatattttagtaatatacttaatttattattgggtatgggtacccgtgggtatgaatacaatcaaatccgtgtccgtatccata 710  Q
    ||||||||||||| || |||||||| || | ||||||| |  |||| ||||||| |||||||||||||||  ||||||||||||||| ||||||||||||    
T  6801431 agataagatatataagaatattttaatattttacttaagtgcttatcgggtatgagtacccgtgggtatgggtacaatcaaatccgtatccgtatccata 6801530  T
Q  711 taataatgggtagtcaaatactc 733  Q
    |||||||||||||||||||||||    
T  6801531 taataatgggtagtcaaatactc 6801553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 390 - 503
Target Start/End: Original strand, 6801215 - 6801327
Alignment:
Q  390 aacattcatacataatccattcaaaatttcataaatcatatataattcatagaaaattcatgattcttacataatgcataacatatgtttttaggatgtg 489  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||| ||||  ||||||||||   |||||    
T  6801215 aacatccatacataatccattcaaaatttcataaatcatacataatccatagaaaattcattattcttacataatccatatgatatgttttt-ttatgtg 6801313  T
Q  490 aatgaagtagaaac 503  Q
    ||||||||||||||    
T  6801314 aatgaagtagaaac 6801327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 404 - 503
Target Start/End: Original strand, 41137752 - 41137850
Alignment:
Q  404 atccattcaaaatttcataaatcatatataattcatagaaaattcatgattcttacataatgcataacatatgtttttaggatgtgaatgaagtagaaac 503  Q
    |||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||| ||||| ||||| ||||| |||||||||||||| |||||    
T  41137752 atccattcaaaatttcataaatcatacataatctatagaaaattcatgattcttacataatccataagatatg-ttttatgatgtgaatgaagtggaaac 41137850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 390 - 480
Target Start/End: Original strand, 33359188 - 33359278
Alignment:
Q  390 aacattcatacataatccattcaaaatttcataaatcatatataattcatagaaaattcatgattcttacataatgcataacatatgtttt 480  Q
    ||||| |||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||  |||||||||    
T  33359188 aacatccatacataattcattcaaaatttcataaatcatacataatccatagaaaattcatgattcttacataatccataggatatgtttt 33359278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 166 - 302
Target Start/End: Complemental strand, 17071797 - 17071661
Alignment:
Q  166 gatgtcaatgggtacccatggatacagatagtatgatactcgtccccgccacattggataaatatgatacccgtgcctgcctcgtaccctcgtgggtacc 265  Q
    ||||||||||| || |||||| |||||| |||||||||| ||| |||  | ||||||||||||||||||| |||| | ||||||||||||||||||||||    
T  17071797 gatgtcaatggatatccatgggtacagagagtatgatac-cgttcccatcccattggataaatatgatactcgtgtccgcctcgtaccctcgtgggtacc 17071699  T
Q  266 catcatgtggatacccg-tgggtattgaggtatccatg 302  Q
    ||  | |||||||||||  |||||||||||||||||||    
T  17071698 cactaagtggatacccgcggggtattgaggtatccatg 17071661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 166 - 302
Target Start/End: Original strand, 17576476 - 17576612
Alignment:
Q  166 gatgtcaatgggtacccatggatacagatagtatgatactcgtccccgccacattggataaatatgatacccgtgcctgcctcgtaccctcgtgggtacc 265  Q
    ||||||||||| || |||||| |||||| |||||||||| ||| |||  | ||||||||||||||||||| |||| | ||||||||||||||||||||||    
T  17576476 gatgtcaatggatatccatgggtacagagagtatgatac-cgttcccatcccattggataaatatgatactcgtgtccgcctcgtaccctcgtgggtacc 17576574  T
Q  266 catcatgtggatacccg-tgggtattgaggtatccatg 302  Q
    ||  | |||||||||||  |||||||||||||||||||    
T  17576575 cactaagtggatacccgcggggtattgaggtatccatg 17576612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 390 - 469
Target Start/End: Complemental strand, 17071580 - 17071501
Alignment:
Q  390 aacattcatacataatccattcaaaatttcataaatcatatataattcatagaaaattcatgattcttacataatgcata 469  Q
    ||||| ||||||||||||||| |||||||||| ||||||| ||||| |||||||||||||||||||||| ||||| ||||    
T  17071580 aacatccatacataatccattaaaaatttcatgaatcatacataatccatagaaaattcatgattcttaaataattcata 17071501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 390 - 469
Target Start/End: Original strand, 17576692 - 17576771
Alignment:
Q  390 aacattcatacataatccattcaaaatttcataaatcatatataattcatagaaaattcatgattcttacataatgcata 469  Q
    ||||| ||||||||||||||| |||||||||| ||||||| ||||| |||||||||||||||||||||| ||||| ||||    
T  17576692 aacatccatacataatccattaaaaatttcatgaatcatacataatccatagaaaattcatgattcttaaataattcata 17576771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 162 - 266
Target Start/End: Original strand, 6801002 - 6801106
Alignment:
Q  162 tagggatgtcaatgggtacccatggatacagatagtatgatactcgtccccgccacattggataaatatgatacccgtgcctgcctcgtaccctcgtggg 261  Q
    ||||||||||||||||||||||||| |||  | | |||||||| | |||||||| | ||||||||||||||||||| || | ||| ||||| ||||||||    
T  6801002 tagggatgtcaatgggtacccatgggtacgaaaattatgatacacatccccgccccgttggataaatatgatacccatgtccgccccgtactctcgtggg 6801101  T
Q  262 taccc 266  Q
    |||||    
T  6801102 taccc 6801106  T

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Target: chr8; HSP #12
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 613 - 740
Target Start/End: Complemental strand, 17071297 - 17071180
Alignment:
Q  613 ataagatatatcaggatattttagtaatatacttaatttattattgggtatgggtacccgtgggtatgaatacaatcaaatccgtgtccgtatccatata 712  Q
    ||||||||||| |||||||||||||||| ||||||| ||| ||| ||||||||||||        || ||   |||||||||| |||| |||||||||||    
T  17071297 ataagatatattaggatattttagtaatttacttaacttactatcgggtatgggtaca-------atcaa---aatcaaatccatgtctgtatccatata 17071208  T
Q  713 ataatgggtagtcaaatactcatttatt 740  Q
    ||||||||||||||||||| ||||||||    
T  17071207 ataatgggtagtcaaatacccatttatt 17071180  T

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Target: chr8; HSP #13
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 613 - 740
Target Start/End: Original strand, 17576975 - 17577092
Alignment:
Q  613 ataagatatatcaggatattttagtaatatacttaatttattattgggtatgggtacccgtgggtatgaatacaatcaaatccgtgtccgtatccatata 712  Q
    ||||||||||| |||||||||||||||| ||||||| ||| ||| ||||||||||||        || ||   |||||||||| |||| |||||||||||    
T  17576975 ataagatatattaggatattttagtaatttacttaacttactatcgggtatgggtaca-------atcaa---aatcaaatccatgtctgtatccatata 17577064  T
Q  713 ataatgggtagtcaaatactcatttatt 740  Q
    ||||||||||||||||||| ||||||||    
T  17577065 ataatgggtagtcaaatacccatttatt 17577092  T

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Target: chr8; HSP #14
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 613 - 731
Target Start/End: Complemental strand, 41287707 - 41287605
Alignment:
Q  613 ataagatatatcaggatattttagtaatatacttaatttattattgggtatgggtacccgtgggtatgaatacaatcaaatccgtgtccgtatccatata 712  Q
    ||||||||||| ||||||||||||||||  | ||||||||||||||||||||||||||                ||||||||||||||||||| ||||||    
T  41287707 ataagatatataaggatattttagtaattaagttaatttattattgggtatgggtacc----------------atcaaatccgtgtccgtattcatata 41287624  T
Q  713 ataatgggtagtcaaatac 731  Q
    |||||||||||||||||||    
T  41287623 ataatgggtagtcaaatac 41287605  T

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Target: chr8; HSP #15
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 162 - 302
Target Start/End: Original strand, 33358967 - 33359106
Alignment:
Q  162 tagggatgtcaatgggtacccatggatacagatagtatgatactcgtccccgccacattggataaatatgatacccgtgcctgcctcgtaccctcgtggg 261  Q
    |||||||||||||| |||||||||| ||| ||||||||||||  |||||| ||| ||||  ||||||||||||||| || | ||| | || |||||||||    
T  33358967 tagggatgtcaatgagtacccatgggtacggatagtatgatatccgtccctgccccattaaataaatatgatacccatgtccgcc-cctatcctcgtggg 33359065  T
Q  262 tacccatcatgtggatacccgtgggtattgaggtatccatg 302  Q
    || |||  ||  |  ||||||||||||||||| ||||||||    
T  33359066 tatccactatacgtgtacccgtgggtattgagatatccatg 33359106  T

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Target: chr8; HSP #16
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 178 - 266
Target Start/End: Complemental strand, 34699821 - 34699733
Alignment:
Q  178 tacccatggatacagatagtatgatactcgtccccgccacattggataaatatgatacccgtgcctgcctcgtaccctcgtgggtaccc 266  Q
    ||||||||| |||||||||||||||||||||  |||||  ||||||||||||| |||| | |||| |||  ||||||||||||||||||    
T  34699821 tacccatggttacagatagtatgatactcgtgtccgccctattggataaatatcatacacatgcccgccctgtaccctcgtgggtaccc 34699733  T

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Target: chr8; HSP #17
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 390 - 469
Target Start/End: Complemental strand, 41288040 - 41287965
Alignment:
Q  390 aacattcatacataatccattcaaaatttcataaatcatatataattcatagaaaattcatgattcttacataatgcata 469  Q
    ||||| ||||||||||| |||||||||||||||||||    ||||| |||||||||||||| ||||||||||||| ||||    
T  41288040 aacatccatacataatctattcaaaatttcataaatc----ataatccatagaaaattcataattcttacataattcata 41287965  T

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Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 183 - 302
Target Start/End: Original strand, 41137555 - 41137673
Alignment:
Q  183 atggatacagatagtatgatactcgtccccgccacattggataaatatgatacccgtgcctgcctcgtaccctcgtgggtacccatcatgtggatacccg 282  Q
    |||| ||||||||  ||||||| ||||||||||    ||||||||||| ||||||||||| ||| ||||||||| |||||| ||| |    || |||||     
T  41137555 atgggtacagatatcatgatacccgtccccgccctggtggataaatataatacccgtgcccgccccgtaccctcctgggtatcca-ctaacgggtaccca 41137653  T
Q  283 tgggtattgaggtatccatg 302  Q
    ||||||||||||||||||||    
T  41137654 tgggtattgaggtatccatg 41137673  T

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Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 240
Target Start/End: Complemental strand, 16028300 - 16028219
Alignment:
Q  160 agtagggatgtcaatgggtacccatggatacagat-agtatgatactcgtccccgccacattggataaatatgatacccgtg 240  Q
    |||||||||||||||||||| |||||||||||| | ||||||||| | ||||||| | | || |||||||||| || |||||    
T  16028300 agtagggatgtcaatgggtatccatggatacaggtaagtatgatatttgtccccgtcccgttcgataaatatggtatccgtg 16028219  T

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Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 390 - 462
Target Start/End: Complemental strand, 45454281 - 45454209
Alignment:
Q  390 aacattcatacataatccattcaaaatttcataaatcatat-ataattcatagaaaattcatgattcttacata 462  Q
    ||||| ||||||||||| ||||||| ||||||||||||||  ||||| |||| |||||| ||||||||||||||    
T  45454281 aacatccatacataatctattcaaa-tttcataaatcataccataatccatacaaaatttatgattcttacata 45454209  T

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Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 611 - 669
Target Start/End: Original strand, 41137962 - 41138020
Alignment:
Q  611 agataagatatatcaggatattttagtaatatacttaatttattattgggtatgggtac 669  Q
    ||||||||| ||| ||||||||||| |||  || |||||||||||| ||||||||||||    
T  41137962 agataagatgtataaggatattttaataaattatttaatttattatcgggtatgggtac 41138020  T

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Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 239
Target Start/End: Original strand, 43953587 - 43953664
Alignment:
Q  162 tagggatgtcaatgggtacccatggatacagatagtatgatactcgtccccgccacattggataaatatgatacccgt 239  Q
    |||||||||||||||||| |  ||||||| | ||||||||||  |  |||| || ||||||||||||||| |||||||    
T  43953587 tagggatgtcaatgggtatctgtggatacgggtagtatgatatccacccccaccccattggataaatatggtacccgt 43953664  T

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Target: scaffold0023 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 390 - 463
Target Start/End: Original strand, 113214 - 113287
Alignment:
Q  390 aacattcatacataatccattcaaaatttcataaatcatatataattcatagaaaattcatgattcttacataa 463  Q
    ||||| ||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||| |||||    
T  113214 aacatccatacataatccattcaaaattttataaatcatacataatccatagaaaattcatgattcttgcataa 113287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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