View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1503R-Insertion-14 (Length: 771)

Name: NF1503R-Insertion-14
Description: NF1503R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1503R-Insertion-14
NF1503R-Insertion-14
[»] chr4 (1 HSPs)
chr4 (9-770)||(51058537-51059297)


Alignment Details
Target: chr4 (Bit Score: 722; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 722; E-Value: 0
Query Start/End: Original strand, 9 - 770
Target Start/End: Original strand, 51058537 - 51059297
Alignment:
Q  9 cttatactactgctgacaaaggaatcttcatgcaaaccaatcctaacggcggtaaatctcctttacctttctttacaattttctatttaagatttataca 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51058537 cttatactactgctgacaaaggaatcttcatgcaaaccaatcctaacggcggtaaatctcctttacctttctttacaattttctatttaagatttataca 51058636  T
Q  109 agtcatagttataatctgaatcacatattaagtttgcatagttttcatctgtaatcttgcaagtttatctactagacaattttcaactttgtttttgtat 208  Q
    ||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51058637 agtcatagtcataatcttaatcacagattaagtttgcatagttttcatctgtaatcttgcaagtttatctactagacaattttcaactttgtttttgtat 51058736  T
Q  209 atacatattacatgtttcttatcattttttctatgtcattctctagtgatctgcttcaattgttcaaattgagatgttccaaaaattgccagtctttgta 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  51058737 atacatattacatgtttcttatcattttttctatgtcattctctagtgatctgattcaattgttcaaattgagatgttccaaaaattgccagtctttgta 51058836  T
Q  309 gttttattagcactataattgtatttcgttttgattcaactttcatacaatgcagggaacaccagttatcatggcagacacactgcagtaactgttcctc 408  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51058837 gttgtattagcactataattgtatttcgttttgattcaactttcatacaatgcagggaacaccagttatcatggcagacacactgcagtaactgttcctc 51058936  T
Q  409 ggcccataaatctccaacctatttctgttccttctattacagtagatgaactgaggtctttcacagataattttgctacaaaaactttcgttggtgaagg 508  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  51058937 ggcacataaatctccaacctatttctgttccttctattacagtagatgaactgaggtctttgacagataattttggtacaaaaactttcgttggtgaagg 51059036  T
Q  509 tgcatatgggaaagtgtatcgtgccacattgaaaaatggacgtgaagtggcaattaaaaagttggattccagtaagcaaccagaccaagaatttctttct 608  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51059037 tgcatatgggaaagtgtatcgtgccacattgaaaaatggacgtgaagtggcaattaaaaagttggattccagtaagcaaccagaccaagaatttctttct 51059136  T
Q  609 caggttcggttcattaacagttataaacttactattagataatcaaagtgacattgtattacatttccctttcagtgctttaaaattttaattcttaaca 708  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  51059137 caggttcggttcattaacagttataaacttactattagataatcaaagtgacattgtattacatttccctttcagtgc-ttaaaattttaattcttaaca 51059235  T
Q  709 taacgcaggtctccatcgtatcaaggctaaagcatgaaaatgttgttgagcttgttaattac 770  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51059236 taacgcaggtctccatcgtatcaaggctaaagcatgaaaatgttgttgagcttgttaattac 51059297  T

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