View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1503R-Insertion-15 (Length: 885)
Name: NF1503R-Insertion-15
Description: NF1503R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1503R-Insertion-15 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 823; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 823; E-Value: 0
Query Start/End: Original strand, 23 - 885
Target Start/End: Complemental strand, 29090553 - 29089691
Alignment:
| Q |
23 |
gatggtggaacactggaagacgacgatgatcacgatgcacaggattgtatctctgaagttgaacgcgtttcttccgatgtggtggatgatttaaaaatta |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
29090553 |
gatggtggaacactggaagacgacgatgatcacgatgcacaggattgtatctctgaagttgaacgcgtttcttccgatgtggtggatgatttgaaaatta |
29090454 |
T |
|
| Q |
123 |
ttgccgagtgcatggtttctaacggttacggaaaagagtgtgtaaacgtttacaccacggttagaaaatcgattgttgatgaaggtgtttacaaactcaa |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29090453 |
ttgccgagtgcatggtttctaacggttacggaaaagagtgtgtaaacgtttacaccacggttagaaaatcgattgttgatgaaggtgtttacaaactcaa |
29090354 |
T |
|
| Q |
223 |
tgtggaggaacgaagtttcttgaaggtgaataagatggactgggaagttcttgagatgaaaatcaactgttggttagaggcagttaagatctcagtgaga |
322 |
Q |
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|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29090353 |
tgtggaggaacgaagtttctcgaaggggaataagatggactgggaagttcttgagatgaaaatcaactgttggttagaggcagttaagatctcagtgaga |
29090254 |
T |
|
| Q |
323 |
acactcttttctggagagagaaacctctgcgaacgaattttcgcttcgaattccatcagagaagcttgttttggtgaaatttcaagagatggagctactc |
422 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29090253 |
acactcttttctggagagagaaacctctgcgaacgaattttcgcttcgaattccatcagagaagcttgttttggtgaaatttcaagagatggagctactc |
29090154 |
T |
|
| Q |
423 |
ttctcttacgatttcctgaattcgttgcgaaaacaaagaaattgacaccggagaagattttccgtttgcttgatatgtatgccacaatcaccgtgttgtt |
522 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
29090153 |
ttctcttacgatttcctgaattcgttgcgaaaacaaagaaatggacaccggagaagattttccgtttgcttgatatgtatgccacaatcaccatgttgtt |
29090054 |
T |
|
| Q |
523 |
accggaggttgaatcgattttctcgttcgattcaacctctggtgttaaatctcaagcatataattcacaacaaagactcgttgaatctgtaagaaatatt |
622 |
Q |
| |
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|||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29090053 |
accggaggttgaatcgattttctctttcaattcaacctctggtgttaaatctcaagcatataattcacaacaaagactcgttgaatctgtaagaaatatt |
29089954 |
T |
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| Q |
623 |
ttctcagaattcgagtccgcaatcctgaaggactcttccaaatcgctggccaatttcggcggtattcattcccttacaatgcaaacaatgcaatatctta |
722 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
29089953 |
ttctcagaattcgagtccgcaatcctgaaggactcttccaaatcgctggcgaatttcggcggtattcattcccttacaacgcaaacaatgcaatatctta |
29089854 |
T |
|
| Q |
723 |
ccaagcttacagattacagcaacgtgctttctgaaatattcttcgacattcctccgtcgttgaattccccattgccagaatcttacttatacagtccaga |
822 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29089853 |
ccaagcttacagattacagcaacgtgctttctgaaatattcttcgacattcctccgtcgttgaattccccattgccagaatcttacttatacagtccaga |
29089754 |
T |
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| Q |
823 |
atcatccaacaactcgacggaaattgaaactgaattttccattcgaatagcgtggttgattct |
885 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29089753 |
atcatccaactactcgacggaaattgaaactgaattttccattcgaatagcgtggttgattct |
29089691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 23 - 885
Target Start/End: Complemental strand, 29104814 - 29103952
Alignment:
| Q |
23 |
gatggtggaacactggaagacgacgatgatcacgatgcacaggattgtatctctgaagttgaacgcgtttcttccgatgtggtggatgatttaaaaatta |
122 |
Q |
| |
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||||| ||||||| |||||| || ||| || || |||| ||||||||||||||||||| |||||| |||||||||||| ||||||||||| | ||||| |
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| T |
29104814 |
gatggaggaacaccggaagaagatgatattcgcgctgcagaggattgtatctctgaagtcgaacgcatttcttccgatgctgtggatgatttgagaatta |
29104715 |
T |
|
| Q |
123 |
ttgccgagtgcatggtttctaacggttacggaaaagagtgtgtaaacgtttacaccacggttagaaaatcgattgttgatgaaggtgtttacaaactcaa |
222 |
Q |
| |
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|||| ||||||||||| |||||||| |||||||| ||| ||| |||||||||||||| |||||||| || || ||||||||| |||| |||||||| |
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| T |
29104714 |
ttgctgagtgcatggtaaaaaacggttatggaaaagaatgtataagagtttacaccacggtgagaaaatccatcgtcgatgaaggtatttataaactcaa |
29104615 |
T |
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| Q |
223 |
tgtggaggaacgaagtttcttgaaggtgaataagatggactgggaagttcttgagatgaaaatcaactgttggttagaggcagttaagatctcagtgaga |
322 |
Q |
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||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |
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| T |
29104614 |
cgtggaggaacgaagtttctcgaagatgaataagatggactgggaagttcttgagatgaaaatcaacagttggttagaggcggttaagatctcagtgagg |
29104515 |
T |
|
| Q |
323 |
acactcttttctggagagagaaacctctgcgaacgaattttcgcttcgaattccatcagagaagcttgttttggtgaaatttcaagagatggagctactc |
422 |
Q |
| |
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|| ||||| | |||||||| ||||||||||| ||||| ||||||||||||||||||| |||||||||||||| ||| ||||| | |||||||||| | |
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| T |
29104514 |
acgctcttcgccggagagaggaacctctgcgatcgaatcttcgcttcgaattccatcaaagaagcttgttttgctgagatttctaaggatggagctattt |
29104415 |
T |
|
| Q |
423 |
ttctcttacgatttcctgaattcgttgcgaaaacaaagaaattgacaccggagaagattttccgtttgcttgatatgtatgccacaatcaccgtgttgtt |
522 |
Q |
| |
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| || ||| ||||||||||| ||||||| ||||||||||||| | |||||||||||||| || |||||||||||||| || ||||||||||||||||| |
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| T |
29104414 |
tacttttaagatttcctgaagtcgttgcaaaaacaaagaaatcaaagccggagaagatttttcgcttgcttgatatgtacgctacaatcaccgtgttgtt |
29104315 |
T |
|
| Q |
523 |
accggaggttgaatcgattttctcgttcgattcaacctctggtgttaaatctcaagcatataattcacaacaaagactcgttgaatctgtaagaaatatt |
622 |
Q |
| |
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|||||| ||||||| ||||||||||| ||||||| | | ||||||||||||||||||||||| ||||| || | | || | |||| ||||| || |
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| T |
29104314 |
gccggagattgaatcaattttctcgtttaattcaacagcagtcgttaaatctcaagcatataattcgcaacatcgattaatcgagtgtgtacgaaatctt |
29104215 |
T |
|
| Q |
623 |
ttctcagaattcgagtccgcaatcctgaaggactcttccaaatcgctggccaatttcggcggtattcattcccttacaatgcaaacaatgcaatatctta |
722 |
Q |
| |
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| | ||||| ||||| |||| ||||||| ||||||||||| ||| ||||||||||| |||||||||| ||| | |||||||||| ||||| | |
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| T |
29104214 |
cttttggaatttgagtctacaatattgaaggattcttccaaatcagcggcaaatttcggcggagttcattccctgacagaggaaacaatgcagtatctca |
29104115 |
T |
|
| Q |
723 |
ccaagcttacagattacagcaacgtgctttctgaaatattcttcgacattcctccgtcgttgaattccccattgccagaatcttacttatacagtccaga |
822 |
Q |
| |
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| ||| ||||||||||||||||||| ||||| |||||||| ||||||||||| || ||| || || ||||||||||||||||||||||||||||| |
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| T |
29104114 |
ttactcttgcagattacagcaacgtgctctctgagatattctttgacattcctcctctgtcgaagtcaccgttgccagaatcttacttatacagtccaga |
29104015 |
T |
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| Q |
823 |
atcatccaacaactcgacggaaattgaaactgaattttccattcgaatagcgtggttgattct |
885 |
Q |
| |
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|||||| ||||| | | ||||| || |||| ||||||| |||||||||||||| ||||||| |
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| T |
29104014 |
atcatcaaacaatactcctgaaatggagactggattttccgttcgaatagcgtggctgattct |
29103952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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